fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G48250.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb027740 HLQQTSLNLALLPEMG in 298/747 AT3G07650.4 not_not 0.442176870 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G48250.1     ------------MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVC
Sb027740_Sorbi1 TASGISQILSRIMASLCDFCGKQRSMIYCRSDAASLCLSCDRNVHSANALSRRHTRTLLC
                            *. :*****:****:*******.****************:**:***:*

AT5G48250.1     ERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIW
Sb027740_Sorbi1 DRCGSQPASVRCLEDNASLCQNCDWNGHDA--ASGASGHKRQAINCYSGCPSSAELSRIW
                :**.:******* ::..********.***.  :: :* ****:************** **

AT5G48250.1     SFCMDLNISSAEESACEQGMGLMTIDE-------DGTGEKSGVQKINV---------EQP
Sb027740_Sorbi1 SFIMDIPTVPAEPN-CEDGLSMMTIDDSDVTNHHDASDDKRLLEIANTTLMSDPPSADKP
                ** **:   .** . **:*:.:****:       *.:.:*  ::  *.         ::*

AT5G48250.1     E---TSSAAQGMD----HSSVPENS-SMAKELGVCEDDFNGN------LISDEVDLALEN
Sb027740_Sorbi1 KPLISSSSGDGFDVLPLATDQPAGSVSVTPKVPYARDDDNFNDGMYEDLCVDDADMTFEN
                :   :**:.:*:*     :. * .* *:: ::  ..** * *      *  *:.*:::**

AT5G48250.1     YEELFGSAFNSSRYLFEHGGIGSLFEKDEAH------EGSMQQPALSNNASADSFMT---
Sb027740_Sorbi1 YEELFGTSHIRTEELFDDAGIDSYFEMKETQPFDFNEEPKTMQLECSNVVSADCGMLNPG
                ******::.  :. **:..**.* ** .*::      * .  *   ** .***. *    

AT5G48250.1     CRTEPIICYSSKPAHSNI--SFSGITGESNAGDFQDCGASSMKQLSREPQPWCHPTAQDI
Sb027740_Sorbi1 ARADSSLCIPVRQVRSSISHSLSGLTGESSAGDHQDCGVSPM-LLMGEP-PWHSPGPEGS
                .*::. :* . : .:*.*  *:**:****.***.****.*.*  *  ** **  * .:. 

AT5G48250.1     IASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYDPM
Sb027740_Sorbi1 VAGG---SRDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAGEAYDYDPL
                :*..   :*:.*: ******* *****::**.*** *****:******:*:********:

AT5G48250.1     SPTRSY
Sb027740_Sorbi1 SQTRSY
                * ****
BoxShade v3.31 C (beta, 970507) Output
AT5G48250.1     - - - - - - - - - - - - M G Y M C D F C G E Q R S M V Y C R S D A A C L C L S C D R N V H S A N A L S K R H S R T L V C
Sb027740_Sorbi1    T A S G I S Q I L S R I M A S L C D F C G K Q R S M I Y C R S D A A S L C L S C D R N V H S A N A L S R R H T R T L L C
 
AT5G48250.1     E R C N A Q P A S V R C S D E R V S L C Q N C D W S G H D G K N S T T T S H H K R Q T I N C Y S G C P S S A E L S S I W
Sb027740_Sorbi1    D R C G S Q P A S V R C L E D N A S L C Q N C D W N G H D A - - A S G A S G H K R Q A I N C Y S G C P S S A E L S R I W
 
AT5G48250.1     S F C M D L N I S S A E E S A C E Q G M G L M T I D E - - - - - - - D G T G E K S G V Q K I N V - - - - - - - - - E Q P
Sb027740_Sorbi1    S F I M D I P T V P A E P N - C E D G L S M M T I D D S D V T N H H D A S D D K R L L E I A N T T L M S D P P S A D K P
 
AT5G48250.1     E - - - T S S A A Q G M D - - - - H S S V P E N S - S M A K E L G V C E D D F N G N - - - - - - L I S D E V D L A L E N
Sb027740_Sorbi1    K P L I S S S S G D G F D V L P L A T D Q P A G S V S V T P K V P Y A R D D D N F N D G M Y E D L C V D D A D M T F E N
 
AT5G48250.1     Y E E L F G S A F N S S R Y L F E H G G I G S L F E K D E A H - - - - - - E G S M Q Q P A L S N N A S A D S F M T - - -
Sb027740_Sorbi1    Y E E L F G T S H I R T E E L F D D A G I D S Y F E M K E T Q P F D F N E E P K T M Q L E C S N V V S A D C G M L N P G
 
AT5G48250.1     C R T E P I I C Y S S K P A H S N I - - S F S G I T G E S N A G D F Q D C G A S S M K Q L S R E P Q P W C H P T A Q D I
Sb027740_Sorbi1    A R A D S S L C I P V R Q V R S S I S H S L S G L T G E S S A G D H Q D C G V S P M - L L M G E P - P W H S P G P E G S
 
AT5G48250.1     I A S S H A T T R N N A V M R Y K E K K K A R K F D K R V R Y V S R K E R A D V R R R V K G R F V K S G E A Y D Y D P M
Sb027740_Sorbi1    V A G G - - - S R D S A L T R Y K E K K K R R K F D K K I R Y A S R K A R A D V R K R V K G R F I K A G E A Y D Y D P L
 
AT5G48250.1     S P T R S Y
Sb027740_Sorbi1    S Q T R S Y
 
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