Input
| Putative repression domain
|
|
AT5G49300.1 |
not found |
|
Ortholog
| Putative repression domain
| Reverse top hit
| Relation
| Blast score ratio
| Type
|
Pt034000 |
not found in 149aa |
AT3G06740.1 |
1st_not |
0.5390625 |
II |
Pt016129 |
SKLGVSLKLDLMGFRR in 91/133 |
AT5G49300.1 |
not_1st |
0.42578125 |
II |
Pt038574 |
MIMDLRTKGPESEDM in 3/147 |
AT5G49300.1 |
not_1st |
0.41796875 |
II |
SKLGVSLNLDLMGFKR in 93/147 |
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.
CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)
AT5G49300.1 MLDHSEKVLLVDSETMKTRAEDMIEQNNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLC
pt034000_POPTR_ MLDPCER--------QGSESEEMSSKSLETESPQKKTCADCGTSKTPLWRGGPAGPKSLC
pt016129_POPTR_ ----------MDFNTKGSESEDMDSTQSSKGNEIKRRCMDCQTTRTPCWRGGPAGPRTLC
pt038574_POPTR_ --------MIMDLRTKGPESEDMDNTHPSKCNEIKRRCTDCQTTRTPCWRGGPAGPRTLC
..:*:* . . . *: * ** *::** *****.**::**
AT5G49300.1 NACGIRNRKKRR--------GGTEDNKKLKKSSSGGG-------NRKFGESLKQSLMDLG
pt034000_POPTR_ NACGIRSRKKKRDILGLNKGGAAANDKRAKKGSTNNGSSNYNNNNKQLGDGLKQRLLALG
pt016129_POPTR_ NACGIRQRKKRRALHGSDKGGAERSKNKIAKSS----------NSSKLGVSLKLDLMGFR
pt038574_POPTR_ NACGIRQRKRRRALLGLDKGGPERSREKMAKGS----------NSSKLGVSLNLDLMGFK
******.**::* * . :: *.* . ::* .*: *: :
AT5G49300.1 ---IRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA------------
pt034000_POPTR_ REVLVQGSTVERRRRKLGEEEQAAVLLMALSYGSVYA------------
pt016129_POPTR_ RDGILQ----EDWKRKLGEEEQAAILLMALSCGLVRA------------
pt038574_POPTR_ RDGMFQ----EDWKRKLGEEEQAAILLMALSCGSVCAWYKKDEGKHFYP
: : * ::*********:****** * * *
BoxShade v3.31 C (beta, 970507) Output
AT5G49300.1 |
M |
L |
D |
H |
S |
E |
K |
V |
L |
L |
V |
D |
S |
E |
T |
M |
K |
T |
R |
A |
E |
D |
M |
I |
E |
Q |
N |
N |
T |
S |
V |
N |
D |
K |
K |
K |
T |
C |
A |
D |
C |
G |
T |
S |
K |
T |
P |
L |
W |
R |
G |
G |
P |
V |
G |
P |
K |
S |
L |
C |
pt034000_POPTR_ |
M |
L |
D |
P |
C |
E |
R |
- |
- |
- |
- |
- |
- |
- |
- |
Q |
G |
S |
E |
S |
E |
E |
M |
S |
S |
K |
S |
L |
E |
T |
E |
S |
P |
Q |
K |
K |
T |
C |
A |
D |
C |
G |
T |
S |
K |
T |
P |
L |
W |
R |
G |
G |
P |
A |
G |
P |
K |
S |
L |
C |
pt016129_POPTR_ |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
M |
D |
F |
N |
T |
K |
G |
S |
E |
S |
E |
D |
M |
D |
S |
T |
Q |
S |
S |
K |
G |
N |
E |
I |
K |
R |
R |
C |
M |
D |
C |
Q |
T |
T |
R |
T |
P |
C |
W |
R |
G |
G |
P |
A |
G |
P |
R |
T |
L |
C |
pt038574_POPTR_ |
- |
- |
- |
- |
- |
- |
- |
- |
M |
I |
M |
D |
L |
R |
T |
K |
G |
P |
E |
S |
E |
D |
M |
D |
N |
T |
H |
P |
S |
K |
C |
N |
E |
I |
K |
R |
R |
C |
T |
D |
C |
Q |
T |
T |
R |
T |
P |
C |
W |
R |
G |
G |
P |
A |
G |
P |
R |
T |
L |
C |
|
AT5G49300.1 |
N |
A |
C |
G |
I |
R |
N |
R |
K |
K |
R |
R |
- |
- |
- |
- |
- |
- |
- |
- |
G |
G |
T |
E |
D |
N |
K |
K |
L |
K |
K |
S |
S |
S |
G |
G |
G |
- |
- |
- |
- |
- |
- |
- |
N |
R |
K |
F |
G |
E |
S |
L |
K |
Q |
S |
L |
M |
D |
L |
G |
pt034000_POPTR_ |
N |
A |
C |
G |
I |
R |
S |
R |
K |
K |
K |
R |
D |
I |
L |
G |
L |
N |
K |
G |
G |
A |
A |
A |
N |
D |
K |
R |
A |
K |
K |
G |
S |
T |
N |
N |
G |
S |
S |
N |
Y |
N |
N |
N |
N |
K |
Q |
L |
G |
D |
G |
L |
K |
Q |
R |
L |
L |
A |
L |
G |
pt016129_POPTR_ |
N |
A |
C |
G |
I |
R |
Q |
R |
K |
K |
R |
R |
A |
L |
H |
G |
S |
D |
K |
G |
G |
A |
E |
R |
S |
K |
N |
K |
I |
A |
K |
S |
S |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
N |
S |
S |
K |
L |
G |
V |
S |
L |
K |
L |
D |
L |
M |
G |
F |
R |
pt038574_POPTR_ |
N |
A |
C |
G |
I |
R |
Q |
R |
K |
R |
R |
R |
A |
L |
L |
G |
L |
D |
K |
G |
G |
P |
E |
R |
S |
R |
E |
K |
M |
A |
K |
G |
S |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
N |
S |
S |
K |
L |
G |
V |
S |
L |
N |
L |
D |
L |
M |
G |
F |
K |
|
AT5G49300.1 |
- |
- |
- |
I |
R |
K |
R |
S |
T |
V |
E |
K |
Q |
R |
Q |
K |
L |
G |
E |
E |
E |
Q |
A |
A |
V |
L |
L |
M |
A |
L |
S |
Y |
G |
S |
V |
Y |
A |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
pt034000_POPTR_ |
R |
E |
V |
L |
V |
Q |
G |
S |
T |
V |
E |
R |
R |
R |
R |
K |
L |
G |
E |
E |
E |
Q |
A |
A |
V |
L |
L |
M |
A |
L |
S |
Y |
G |
S |
V |
Y |
A |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
pt016129_POPTR_ |
R |
D |
G |
I |
L |
Q |
- |
- |
- |
- |
E |
D |
W |
K |
R |
K |
L |
G |
E |
E |
E |
Q |
A |
A |
I |
L |
L |
M |
A |
L |
S |
C |
G |
L |
V |
R |
A |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
pt038574_POPTR_ |
R |
D |
G |
M |
F |
Q |
- |
- |
- |
- |
E |
D |
W |
K |
R |
K |
L |
G |
E |
E |
E |
Q |
A |
A |
I |
L |
L |
M |
A |
L |
S |
C |
G |
S |
V |
C |
A |
W |
Y |
K |
K |
D |
E |
G |
K |
H |
F |
Y |
P |
|
|