fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G49300.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm045841 not found in 140aa AT3G06740.1 1st_not 0.43359375 II
Gm019345 not found in 130aa AT5G49300.1 not_1st 0.4296875 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G49300.1     MLDHSEKVLLVDSETMKTRAEDMIEQNN-TSVNDKKKTCADCGTSKTPLWRGGPVGPKSL
gm019345_Glyma0 MVDPTGKGSEIEVEDSNSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSL
gm045841_Glyma1 MVDPTGKGSEVEVEDSNSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSL
                *:* : *   :: *  ::..:   . *. :* *::*********:*********.*****

AT5G49300.1     CNACGIRNRKKRR-------GGTEDNKKLKKSSSGGGNRKF-GESLKQSLMDLGIRKRST
gm019345_Glyma0 CNACGIRSRKKKRAILGINKGSNEDGRKGKRT----------GGALGKEVL----LHRS-
gm045841_Glyma1 CNACGIRSRKKKRAILGINKGSTEDGRKGKRTGGGGGIGGIGGGALGREVL----LHRS-
                *******.***:*       *..**.:* *::          * :* :.::     :** 

AT5G49300.1     VEKQRQKLGEEEQAAVLLMALSYGSVYA
gm019345_Glyma0 ---HWKKLGEEEKAAVLLMSLSYGSVYA
gm045841_Glyma1 ---HWKKLGEEEKAAVLLMSLSYGSVYA
                   : :******:******:********
BoxShade v3.31 C (beta, 970507) Output
AT5G49300.1     M L D H S E K V L L V D S E T M K T R A E D M I E Q N N - T S V N D K K K T C A D C G T S K T P L W R G G P V G P K S L
gm019345_Glyma0    M V D P T G K G S E I E V E D S N S N P N A P S S G N S P S S N N E Q K K T C A D C G T T K T P L W R G G P A G P K S L
gm045841_Glyma1    M V D P T G K G S E V E V E D S N S N P N A P S S G N S P S S N N E Q K K T C A D C G T T K T P L W R G G P A G P K S L
 
AT5G49300.1     C N A C G I R N R K K R R - - - - - - - G G T E D N K K L K K S S S G G G N R K F - G E S L K Q S L M D L G I R K R S T
gm019345_Glyma0    C N A C G I R S R K K K R A I L G I N K G S N E D G R K G K R T - - - - - - - - - - G G A L G K E V L - - - - L H R S -
gm045841_Glyma1    C N A C G I R S R K K K R A I L G I N K G S T E D G R K G K R T G G G G G I G G I G G G A L G R E V L - - - - L H R S -
 
AT5G49300.1     V E K Q R Q K L G E E E Q A A V L L M A L S Y G S V Y A
gm019345_Glyma0    - - - H W K K L G E E E K A A V L L M S L S Y G S V Y A
gm045841_Glyma1    - - - H W K K L G E E E K A A V L L M S L S Y G S V Y A
 
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