fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G50480.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm015491 not found in 229aa AT3G48590.1 1st_not 0.473509933 II
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G50480.1     MAENNNNNGDNMNNDNHQQ---------------------------PPSYSQLPPMASSN
gm015491_Glyma0 -----------METNNQQQQQQGAQAQSGPYPVAGAGGSAGAGAGAPPPFQHL--LQQQQ
                           *:.:*:**                           **.:.:*  : ..:

AT5G50480.1     PQLRNYWI---EQMETVSDFKNRQLPLARIKKIMKADPDVHMVSAEAPIIFAKACEMFIV
gm015491_Glyma0 QQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFIL
                 **: :*    :::* *.****:************** **:*:******:******:**:

AT5G50480.1     DLTMRSWLKAEENKRHTLQKSDISNAVASSFTYDFLLDVVPKDESIATADPGFVAMPHPD
gm015491_Glyma0 ELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDA-----ALVGAT
                :**:****:******:****.**: *:: :  :***:*:**:**    *     *:  . 

AT5G50480.1     GGGVPQYYYPP-----GVVMGTPMV--GSGMYA--PSQAWPAAAGDGEDDAEDNGGNGGG
gm015491_Glyma0 ASGVP-YYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAAEDASYGTGGAGA
                ..*** *****     *:::* * *  .:*:*.  ***** :.  .. :**. . *..*.

AT5G50480.1     N-------
gm015491_Glyma0 QRSLDGQS
                :
BoxShade v3.31 C (beta, 970507) Output
AT5G50480.1     M A E N N N N N G D N M N N D N H Q Q - - - - - - - - - - - - - - - - - - - - - - - - - - - P P S Y S Q L P P M A S S N
gm015491_Glyma0    - - - - - - - - - - - M E T N N Q Q Q Q Q Q G A Q A Q S G P Y P V A G A G G S A G A G A G A P P P F Q H L - - L Q Q Q Q
 
AT5G50480.1     P Q L R N Y W I - - - E Q M E T V S D F K N R Q L P L A R I K K I M K A D P D V H M V S A E A P I I F A K A C E M F I V
gm015491_Glyma0    Q Q L Q M F W S Y Q R Q E I E H V N D F K N H Q L P L A R I K K I M K A D E D V R M I S A E A P I L F A K A C E L F I L
 
AT5G50480.1     D L T M R S W L K A E E N K R H T L Q K S D I S N A V A S S F T Y D F L L D V V P K D E S I A T A D P G F V A M P H P D
gm015491_Glyma0    E L T I R S W L H A E E N K R R T L Q K N D I A A A I T R T D I F D F L V D I V P R D E I K D D A - - - - - A L V G A T
 
AT5G50480.1     G G G V P Q Y Y Y P P - - - - - G V V M G T P M V - - G S G M Y A - - P S Q A W P A A A G D G E D D A E D N G G N G G G
gm015491_Glyma0    A S G V P - Y Y Y P P I G Q P A G M M I G R P A V D P A T G V Y V Q P P S Q A W Q S V W Q S A A E D A S Y G T G G A G A
 
AT5G50480.1     N - - - - - - -
gm015491_Glyma0    Q R S L D G Q S
 
0