fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G50490.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt036437 not found in 258aa AT1G56170.2 1st_not 0.400621118 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G50490.1     MENNNN------------------------------------------------------
pt036437_POPTR_ MDQSQQTRQQQSQQQPVVAGAGQMAYASTPYQTAPMVASGTPSIAIPSPTQSPATFSNSP
                *::.::                                                      

AT5G50490.1     -----------NHQQPPKDNEQLKSFWSKGM---EGDLNVKNHEFPISRIKRIMKFDPDV
pt036437_POPTR_ HQLTYQQAQHFHHQQQQQQQQQLQMFWTIQMQEIEQTTDFKNHSLPLARIKKIMKADEDV
                           :***  ::::**: **:  *   *   :.***.:*::***:*** * **

AT5G50490.1     SMIAAEAPNLLSKACEMFVMDLTMRSWLHAQESNRLTIRKSDVDAVVSQTVIFDFLRDDV
pt036437_POPTR_ RMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII
                 **:**** :::******:::**:***:*::*.:* *::*.*: *.:*:* :**** * :

AT5G50490.1     PKD----EGEPVVAAADPVDDVAD--HVAVPDLNNEELPPGTVIGTPVCYGLGIHAPHPQ
pt036437_POPTR_ PRDELKEEGLGVTKATIPVGPPADLPYYYVP--QHPVGPPGMIMGKPVDQAAAYEAQQPQ
                *:*    **  *. *: **.  **  :  **  ::   *** ::*.**  . . .* :**

AT5G50490.1     MPGA---WTEEDATGANGGNGGN
pt036437_POPTR_ PPVALMPWLQTQPQQQQSDP---
                 * *   * : :.   :..
BoxShade v3.31 C (beta, 970507) Output
AT5G50490.1     M E N N N N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt036437_POPTR_    M D Q S Q Q T R Q Q Q S Q Q Q P V V A G A G Q M A Y A S T P Y Q T A P M V A S G T P S I A I P S P T Q S P A T F S N S P
 
AT5G50490.1     - - - - - - - - - - - N H Q Q P P K D N E Q L K S F W S K G M - - - E G D L N V K N H E F P I S R I K R I M K F D P D V
pt036437_POPTR_    H Q L T Y Q Q A Q H F H H Q Q Q Q Q Q Q Q Q L Q M F W T I Q M Q E I E Q T T D F K N H S L P L A R I K K I M K A D E D V
 
AT5G50490.1     S M I A A E A P N L L S K A C E M F V M D L T M R S W L H A Q E S N R L T I R K S D V D A V V S Q T V I F D F L R D D V
pt036437_POPTR_    R M I S A E A P V I F A K A C E M F I L E L T L R S W I H T E E N K R R T L Q K N D I A A A I S R T D V F D F L V D I I
 
AT5G50490.1     P K D - - - - E G E P V V A A A D P V D D V A D - - H V A V P D L N N E E L P P G T V I G T P V C Y G L G I H A P H P Q
pt036437_POPTR_    P R D E L K E E G L G V T K A T I P V G P P A D L P Y Y Y V P - - Q H P V G P P G M I M G K P V D Q A A A Y E A Q Q P Q
 
AT5G50490.1     M P G A - - - W T E E D A T G A N G G N G G N
pt036437_POPTR_    P P V A L M P W L Q T Q P Q Q Q Q S D P - - -
 
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