fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G51780.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt023916 not found in 240aa AT4G25410.1 1st_not 0.450160771 II
Pt026795 not found in 246aa AT4G25410.1 not_not 0.446945337 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G51780.1     ----------------------------------------------ME------------
pt023916_POPTR_ MFPLHQGDELCFNISSDPHQQHNIPQDLILA-RYAALQGS-DTTNKMENDRRRFLISMDS
pt026795_POPTR_ MFPLHQGGELCFKISSSPHQQDNIP-DLILAHQYAEIHGSTDITNNMEKGRRRNIISMDN
                                                              **            

AT5G51780.1     --------------KMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVN
pt023916_POPTR_ NHEVARDHSKNNNKKMMHRNIERQRRQEMTTLYASLRALLPLEFIKGKRSISDHMNESVN
pt026795_POPTR_ N-EAARDNNNNSKKKMMHRDIERQRRQEMTTLYASLRALLPLEFIKGKRSISDHMNEAVN
                              *****: ********::******:****.******* **::**:**

AT5G51780.1     YIKYLQRKIKELSVRRDDLMVL----SRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVG
pt023916_POPTR_ YIKYLQKKIKELSAKRDGLKKSPNL-SFDSPSGSSNKY--------SPISPVTLQPYPGG
pt026795_POPTR_ YIKYLQKKIKETSAKRDELKKLSDFSSVASPSGCSNKS--------SS-SSVALQPYPGG
                ******:**** *.:** *       *  *  *.**          *  . *.::    *

AT5G51780.1     VEIMLSSRCCGGQPRFSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLA
pt023916_POPTR_ IEVVFDSDFRGQDSPLSRVLQVLLEEGISVVNCVSTKVNERLFHTVQTEVNDPACL-NLS
pt026795_POPTR_ IEITFDSDLMGRDLPLSRVLQVLLEEGISVINCVSTKVNERLFHSVQTEVNDPTCL-NLS
                :*: :.*   * :  :* ***** * *:.::*.:*: *::**.:::*:**** : : :*:

AT5G51780.1     ELEKRLIRMK--------
pt023916_POPTR_ ELRQKLTLRVVS------
pt026795_POPTR_ ELWQKLTLVVSSTSDLSK
                ** ::*
BoxShade v3.31 C (beta, 970507) Output
AT5G51780.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E - - - - - - - - - - - -
pt023916_POPTR_    M F P L H Q G D E L C F N I S S D P H Q Q H N I P Q D L I L A - R Y A A L Q G S - D T T N K M E N D R R R F L I S M D S
pt026795_POPTR_    M F P L H Q G G E L C F K I S S S P H Q Q D N I P - D L I L A H Q Y A E I H G S T D I T N N M E K G R R R N I I S M D N
 
AT5G51780.1     - - - - - - - - - - - - - - K M M H R E T E R Q R R Q E M A S L Y A S L R S L L P L H F I K G K R S T S D Q V N E A V N
pt023916_POPTR_    N H E V A R D H S K N N N K K M M H R N I E R Q R R Q E M T T L Y A S L R A L L P L E F I K G K R S I S D H M N E S V N
pt026795_POPTR_    N - E A A R D N N N N S K K K M M H R D I E R Q R R Q E M T T L Y A S L R A L L P L E F I K G K R S I S D H M N E A V N
 
AT5G51780.1     Y I K Y L Q R K I K E L S V R R D D L M V L - - - - S R G S L L G S S N G D F K E D V E M I S G K N H V V V R Q C L V G
pt023916_POPTR_    Y I K Y L Q K K I K E L S A K R D G L K K S P N L - S F D S P S G S S N K Y - - - - - - - - S P I S P V T L Q P Y P G G
pt026795_POPTR_    Y I K Y L Q K K I K E T S A K R D E L K K L S D F S S V A S P S G C S N K S - - - - - - - - S S - S S V A L Q P Y P G G
 
AT5G51780.1     V E I M L S S R C C G G Q P R F S S V L Q V L S E Y G L C L L N S I S S I V D D R L V Y T I Q A E V N D M A L M I D L A
pt023916_POPTR_    I E V V F D S D F R G Q D S P L S R V L Q V L L E E G I S V V N C V S T K V N E R L F H T V Q T E V N D P A C L - N L S
pt026795_POPTR_    I E I T F D S D L M G R D L P L S R V L Q V L L E E G I S V I N C V S T K V N E R L F H S V Q T E V N D P T C L - N L S
 
AT5G51780.1     E L E K R L I R M K - - - - - - - -
pt023916_POPTR_    E L R Q K L T L R V V S - - - - - -
pt026795_POPTR_    E L W Q K L T L V V S S T S D L S K
 
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