fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52010.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm039400 not found in 412aa AT5G52010.1 1st_1st 0.569620253 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G52010.1     ----------------MSLFCNSIETLYPKPFLSHKS----HFFTFSNSKFQN-PKFTS-
gm039400_Glyma1 MKRKTGSLDFLAPQLPLSFYPSSGDAMNNSLFLLHNANAIIHFNFHSHPTLPSIPRTTKP
                                :*:: .* :::  . ** *::    **  .*:..: . *: *. 

AT5G52010.1     FPLRHQWRIESCLKSASSSEIDMVRNKEGIFAPKEKKVVVLWDLDNKPPRGPPYEAATAL
gm039400_Glyma1 FPHRHYPRIQCC---SSNIQIDMVKNSQGIYAPKNDKVVVLWDLDNKPPRGAPYDAAVSL
                ** **  **:.*   :*. :****:*.:**:***:.***************.**:**.:*

AT5G52010.1     RKVAEKLGRVVEISAYANRHAFIHLPHWVVEERRERRNLDFMERKGEVTPIDPYICGVCG
gm039400_Glyma1 KTLAARFGHLVDFSAYANRHAFVHLPQWVLHQRRHRRNLDILERKGVITPPEPYTCGVCG
                :.:* ::*::*::*********:***:**:.:**.*****::**** :** :** *****

AT5G52010.1     RKCKTNLDLKKHFKQLHERERQKKVNRMRSLKGKKRQKFKERYVSGNEKYNEAARSLLTP
gm039400_Glyma1 RKCKTHLDLKKHFKQLHQRERQKKLNRLKSLKGKKRHRFKERFLRGNHKYDDAARTLVVP
                *****:***********:******:**::*******::****:: **.**::***:*:.*

AT5G52010.1     KVGYGLEAELRRAGVYVKTVEDKPQAADWAVKRQIQHSMTRGIDWLVLVSDDKDFSDMLR
gm039400_Glyma1 KVGYGLAAELRRAGVFVKTVQDKPQAADWALKRQMVHSMSRGIDWLFLVSDDSDFSEMLR
                ****** ********:****:*********:***: ***:******.*****.***:***

AT5G52010.1     KAREADLGTLVVSDMDRALGRHADLWVPWSGVEKGEIGEKDLIPGK-----RPRFEEDEV
gm039400_Glyma1 RAREADLGTVVVGDWDKALGRHADLWVPWSGVENGEVG--DLLPKRRRENSRRREQGEEH
                :********:**.* *:****************:**:*  **:* :     * * : :* 

AT5G52010.1     GFGGNDELFSLSYDEDEKAEMTVESDGFGRFNVSAFSEDEWVEDEGDFVLSDSSDDDSDD
gm039400_Glyma1 GFGLEDDDGGVFLNEDEE---------LGQEFMLLYSED---EDE-DVDVEDYYDDDDDD
                *** :*:  .:  :***:         :*:  :  :***   *** *. :.*  ***.**

AT5G52010.1     E-----LF--
gm039400_Glyma1 EEEEDGFYIL
                *     ::
BoxShade v3.31 C (beta, 970507) Output
AT5G52010.1     - - - - - - - - - - - - - - - - M S L F C N S I E T L Y P K P F L S H K S - - - - H F F T F S N S K F Q N - P K F T S -
gm039400_Glyma1    M K R K T G S L D F L A P Q L P L S F Y P S S G D A M N N S L F L L H N A N A I I H F N F H S H P T L P S I P R T T K P
 
AT5G52010.1     F P L R H Q W R I E S C L K S A S S S E I D M V R N K E G I F A P K E K K V V V L W D L D N K P P R G P P Y E A A T A L
gm039400_Glyma1    F P H R H Y P R I Q C C - - - S S N I Q I D M V K N S Q G I Y A P K N D K V V V L W D L D N K P P R G A P Y D A A V S L
 
AT5G52010.1     R K V A E K L G R V V E I S A Y A N R H A F I H L P H W V V E E R R E R R N L D F M E R K G E V T P I D P Y I C G V C G
gm039400_Glyma1    K T L A A R F G H L V D F S A Y A N R H A F V H L P Q W V L H Q R R H R R N L D I L E R K G V I T P P E P Y T C G V C G
 
AT5G52010.1     R K C K T N L D L K K H F K Q L H E R E R Q K K V N R M R S L K G K K R Q K F K E R Y V S G N E K Y N E A A R S L L T P
gm039400_Glyma1    R K C K T H L D L K K H F K Q L H Q R E R Q K K L N R L K S L K G K K R H R F K E R F L R G N H K Y D D A A R T L V V P
 
AT5G52010.1     K V G Y G L E A E L R R A G V Y V K T V E D K P Q A A D W A V K R Q I Q H S M T R G I D W L V L V S D D K D F S D M L R
gm039400_Glyma1    K V G Y G L A A E L R R A G V F V K T V Q D K P Q A A D W A L K R Q M V H S M S R G I D W L F L V S D D S D F S E M L R
 
AT5G52010.1     K A R E A D L G T L V V S D M D R A L G R H A D L W V P W S G V E K G E I G E K D L I P G K - - - - - R P R F E E D E V
gm039400_Glyma1    R A R E A D L G T V V V G D W D K A L G R H A D L W V P W S G V E N G E V G - - D L L P K R R R E N S R R R E Q G E E H
 
AT5G52010.1     G F G G N D E L F S L S Y D E D E K A E M T V E S D G F G R F N V S A F S E D E W V E D E G D F V L S D S S D D D S D D
gm039400_Glyma1    G F G L E D D D G G V F L N E D E E - - - - - - - - - L G Q E F M L L Y S E D - - - E D E - D V D V E D Y Y D D D D D D
 
AT5G52010.1     E - - - - - L F - -
gm039400_Glyma1    E E E E D G F Y I L
 
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