fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028639 not found in 270aa AT3G48920.1 1st_not 0.412121212 II
Pt022949 not found in 325aa AT5G52260.1 not_1st 0.4 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G52260.1     ---------------------------------MTKSGERPKQR--QRKGLWSPEEDQKL
gm028639_Glyma1 --------------------------------MGFQPMEKGKAK--HKKGLWSPEEDNKL
pt022949_POPTR_ MPKAFIASITKSKTLFLLYKSPILLIIGVLGEMGCKSSDKPKPKLRHRKGLWSPEEDQRL
                                                   :. :: * :  ::*********::*

AT5G52260.1     KSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHSSL
gm028639_Glyma1 RNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHDML
pt022949_POPTR_ GSYVFQHGHGCWSSVPINAGLQRTGKSCRLRWINYLRPGLKRGAFSTDEEETILTLHRML
                 ..::.:**.**::*** *****.******************* ** :*********  *

AT5G52260.1     GNKWSRIAKYLPGRTDNEIKNYWHSYLKKRWLK-----SQPQLKSQIS-----DLTESPS
gm028639_Glyma1 GNKWSQISQHLPGRTDNEIKNYWHSYLKKRVAKAKEMESHNQIKYASSSSDTIDSSNSIQ
pt022949_POPTR_ GNKWSQIAQHLPGRTDNEIKNHWHSYLKKKLFKAEGMESPNKTQSASSNSDNMDLSPSPK
                *****:*:::***********:*******:  *     *  : :   *     * : * .

AT5G52260.1     SLLSCGKR---NLETETLD-------HVISFQKFSENPTSSPSKESNNNMIMNNSNNLPK
gm028639_Glyma1 KLATQGQQ-------------------IYNFTKES-----------------CQSS-LPK
pt022949_POPTR_ RLKMQSPESSMNMEKPSTDIDRPVLPRMFDYLKEP-----------------NRSSLLPK
                 *   . .                   : .: * .                  .*. ***

AT5G52260.1     LFFSEWISSSNPH-------------IDYSSAFTDSKHINETQDQINEEEVMMINNNNYS
gm028639_Glyma1 LLFAEWLSLDHVNSANSVESLGLRNGFDHNSTFQEAA-IHD------MSEVPF--GGDYN
pt022949_POPTR_ VMFAEWLSLDSF--ASSGEPVVSKSTFDHNPSFQDTSFMHHY----LLEEGAF--GGDYQ
                ::*:**:* .                :*:..:* ::  ::.       .*  :  ..:*.

AT5G52260.1     SLEDVMLRTDFLQPDHEYANY----------------YSSG-------DFFINSD-QNYV
gm028639_Glyma1 RCVSNIPAPEMFNSQLKYANQMVENGYIHCMPG--FDLSS--------NFSMSNDAIMYI
pt022949_POPTR_ NSLSDGSSGDIFSSEFKFESQ---------SPGNEFDFSSGEDLCREFNFRNIGD-VMYI
                   .     :::..: :: .                  **        :*   .*   *:
BoxShade v3.31 C (beta, 970507) Output
AT5G52260.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M T K S G E R P K Q R - - Q R K G L W S P E E D Q K L
gm028639_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M G F Q P M E K G K A K - - H K K G L W S P E E D N K L
pt022949_POPTR_    M P K A F I A S I T K S K T L F L L Y K S P I L L I I G V L G E M G C K S S D K P K P K L R H R K G L W S P E E D Q R L
 
AT5G52260.1     K S F I L S R G H A C W T T V P I L A G L Q R N G K S C R L R W I N Y L R P G L K R G S F S E E E E E T I L T L H S S L
gm028639_Glyma1    R N H I L K H G H G C W S S V P I K A G L Q R N G K S C R L R W I N Y L R P G L K R G K F S K Q E E E T I L T L H D M L
pt022949_POPTR_    G S Y V F Q H G H G C W S S V P I N A G L Q R T G K S C R L R W I N Y L R P G L K R G A F S T D E E E T I L T L H R M L
 
AT5G52260.1     G N K W S R I A K Y L P G R T D N E I K N Y W H S Y L K K R W L K - - - - - S Q P Q L K S Q I S - - - - - D L T E S P S
gm028639_Glyma1    G N K W S Q I S Q H L P G R T D N E I K N Y W H S Y L K K R V A K A K E M E S H N Q I K Y A S S S S D T I D S S N S I Q
pt022949_POPTR_    G N K W S Q I A Q H L P G R T D N E I K N H W H S Y L K K K L F K A E G M E S P N K T Q S A S S N S D N M D L S P S P K
 
AT5G52260.1     S L L S C G K R - - - N L E T E T L D - - - - - - - H V I S F Q K F S E N P T S S P S K E S N N N M I M N N S N N L P K
gm028639_Glyma1    K L A T Q G Q Q - - - - - - - - - - - - - - - - - - - I Y N F T K E S - - - - - - - - - - - - - - - - - C Q S S - L P K
pt022949_POPTR_    R L K M Q S P E S S M N M E K P S T D I D R P V L P R M F D Y L K E P - - - - - - - - - - - - - - - - - N R S S L L P K
 
AT5G52260.1     L F F S E W I S S S N P H - - - - - - - - - - - - - I D Y S S A F T D S K H I N E T Q D Q I N E E E V M M I N N N N Y S
gm028639_Glyma1    L L F A E W L S L D H V N S A N S V E S L G L R N G F D H N S T F Q E A A - I H D - - - - - - M S E V P F - - G G D Y N
pt022949_POPTR_    V M F A E W L S L D S F - - A S S G E P V V S K S T F D H N P S F Q D T S F M H H Y - - - - L L E E G A F - - G G D Y Q
 
AT5G52260.1     S L E D V M L R T D F L Q P D H E Y A N Y - - - - - - - - - - - - - - - - Y S S G - - - - - - - D F F I N S D - Q N Y V
gm028639_Glyma1    R C V S N I P A P E M F N S Q L K Y A N Q M V E N G Y I H C M P G - - F D L S S - - - - - - - - N F S M S N D A I M Y I
pt022949_POPTR_    N S L S D G S S G D I F S S E F K F E S Q - - - - - - - - - S P G N E F D F S S G E D L C R E F N F R N I G D - V M Y I
 
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