fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt027423 not found in 295aa AT5G52260.1 1st_1st 0.424242424 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G52260.1     -MTKSGE----RPKQRQRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRL
pt027423_POPTR_ MGCKSSDMPKLKPKPKHRKGLWSPEEDQRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRL
                   **.:    :** ::***********:*:.::*.:**.**::*** ************

AT5G52260.1     RWINYLRPGLKRGSFSEEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSYLKKR
pt027423_POPTR_ RWINYLRPGLKRGTFSAQEEETILALHHMLGNKWSQIAQHLPGRTDNEIKNHWHSYLKKN
                *************:** :******:**  ******:**::***********:*******.

AT5G52260.1     WLKSQ--PQLK--------SQISDLTESPSSLLSCGKRNLETETLDHVISFQKFSENPTS
pt027423_POPTR_ LLKDEGMESLKRTKSDSSNSDIMELSPSPKRL------KMQASSFESSMSAEKSSADINR
                 **.:   .**        *:* :*: **. *      ::::.:::  :* :* * : . 

AT5G52260.1     SPSK--ESNNNMIMNNSNNLPKLFFSEWIS-----------SSNPHIDYSSAFTDSKHIN
pt027423_POPTR_ SVPQMFESPNE--PKGSSLLPKVMFAEWLSLESFASLGEPMDSKTTLDHNTIFQD----N
                * .:  ** *:   :.*. ***::*:**:*           .*:. :*:.: * *    *

AT5G52260.1     ETQDQINEEEVMMINNNNYSSLED--------VMLRTDFLQPDHEYANYYSSG-----DF
pt027423_POPTR_ FLHDYLLDERAF--GGEYHNSLSDGSSGDIFSSEFRFESQSPGNEFD--FSSGEDLCSDF
                  :* : :*..:  ..: :.**.*          :* :  .*.:*:   :***     **

AT5G52260.1     FIN--SDQNYV
pt027423_POPTR_ NLSNISDVMYI
                 :.  **  *:
BoxShade v3.31 C (beta, 970507) Output
AT5G52260.1     - M T K S G E - - - - R P K Q R Q R K G L W S P E E D Q K L K S F I L S R G H A C W T T V P I L A G L Q R N G K S C R L
pt027423_POPTR_    M G C K S S D M P K L K P K P K H R K G L W S P E E D Q R L R N Y V L K H G H G C W S S V P I N A G L Q R N G K S C R L
 
AT5G52260.1     R W I N Y L R P G L K R G S F S E E E E E T I L T L H S S L G N K W S R I A K Y L P G R T D N E I K N Y W H S Y L K K R
pt027423_POPTR_    R W I N Y L R P G L K R G T F S A Q E E E T I L A L H H M L G N K W S Q I A Q H L P G R T D N E I K N H W H S Y L K K N
 
AT5G52260.1     W L K S Q - - P Q L K - - - - - - - - S Q I S D L T E S P S S L L S C G K R N L E T E T L D H V I S F Q K F S E N P T S
pt027423_POPTR_    L L K D E G M E S L K R T K S D S S N S D I M E L S P S P K R L - - - - - - K M Q A S S F E S S M S A E K S S A D I N R
 
AT5G52260.1     S P S K - - E S N N N M I M N N S N N L P K L F F S E W I S - - - - - - - - - - - S S N P H I D Y S S A F T D S K H I N
pt027423_POPTR_    S V P Q M F E S P N E - - P K G S S L L P K V M F A E W L S L E S F A S L G E P M D S K T T L D H N T I F Q D - - - - N
 
AT5G52260.1     E T Q D Q I N E E E V M M I N N N N Y S S L E D - - - - - - - - V M L R T D F L Q P D H E Y A N Y Y S S G - - - - - D F
pt027423_POPTR_    F L H D Y L L D E R A F - - G G E Y H N S L S D G S S G D I F S S E F R F E S Q S P G N E F D - - F S S G E D L C S D F
 
AT5G52260.1     F I N - - S D Q N Y V
pt027423_POPTR_    N L S N I S D V M Y I
 
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