fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt022949 not found in 325aa AT5G52260.1 not_1st 0.4 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G52260.1     --------MTKS------------------GE---------RPKQRQRKGLWSPEEDQKL
pt022949_POPTR_ MPKAFIASITKSKTLFLLYKSPILLIIGVLGEMGCKSSDKPKPKLRHRKGLWSPEEDQRL
                        :***                  **         :** *:***********:*

AT5G52260.1     KSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHSSL
pt022949_POPTR_ GSYVFQHGHGCWSSVPINAGLQRTGKSCRLRWINYLRPGLKRGAFSTDEEETILTLHRML
                 *:::.:**.**::*** *****.*******************:** :*********  *

AT5G52260.1     GNKWSRIAKYLPGRTDNEIKNYWHSYLKKRWLKSQPQLKSQISDLTESPSSLLSCGKRNL
pt022949_POPTR_ GNKWSQIAQHLPGRTDNEIKNHWHSYLKKKLFKAEGM---------ESPNKTQSASS---
                *****:**::***********:*******: :*::           ***..  *...   

AT5G52260.1     ETETLDHVISFQKFS-ENPTSS-----PSKESNNNMI---------MNNSNNLPKLFFSE
pt022949_POPTR_ NSDNMDLSPSPKRLKMQSPESSMNMEKPSTDIDRPVLPRMFDYLKEPNRSSLLPKVMFAE
                :::.:*   * :::. :.* **     **.: :. ::          *.*. ***::*:*

AT5G52260.1     WI------SSSNPHI-----DYSSAFTDSKHIN-----------ETQDQINE--------
pt022949_POPTR_ WLSLDSFASSGEPVVSKSTFDHNPSFQDTSFMHHYLLEEGAFGGDYQNSLSDGSSGDIFS
                *:      **.:* :     *:..:* *:..::           : *:.:.:        

AT5G52260.1     -----EEVMMINNNNYSSLEDVMLRTDFLQPDHEYANYYSSGDFFINSDQNYV
pt022949_POPTR_ SEFKFESQSPGNEFDFSSGEDLC---------REF-NFRNIGDVM------YI
                     *.    *: ::** **:          :*: *: . **.:      *:
BoxShade v3.31 C (beta, 970507) Output
AT5G52260.1     - - - - - - - - M T K S - - - - - - - - - - - - - - - - - - G E - - - - - - - - - R P K Q R Q R K G L W S P E E D Q K L
pt022949_POPTR_    M P K A F I A S I T K S K T L F L L Y K S P I L L I I G V L G E M G C K S S D K P K P K L R H R K G L W S P E E D Q R L
 
AT5G52260.1     K S F I L S R G H A C W T T V P I L A G L Q R N G K S C R L R W I N Y L R P G L K R G S F S E E E E E T I L T L H S S L
pt022949_POPTR_    G S Y V F Q H G H G C W S S V P I N A G L Q R T G K S C R L R W I N Y L R P G L K R G A F S T D E E E T I L T L H R M L
 
AT5G52260.1     G N K W S R I A K Y L P G R T D N E I K N Y W H S Y L K K R W L K S Q P Q L K S Q I S D L T E S P S S L L S C G K R N L
pt022949_POPTR_    G N K W S Q I A Q H L P G R T D N E I K N H W H S Y L K K K L F K A E G M - - - - - - - - - E S P N K T Q S A S S - - -
 
AT5G52260.1     E T E T L D H V I S F Q K F S - E N P T S S - - - - - P S K E S N N N M I - - - - - - - - - M N N S N N L P K L F F S E
pt022949_POPTR_    N S D N M D L S P S P K R L K M Q S P E S S M N M E K P S T D I D R P V L P R M F D Y L K E P N R S S L L P K V M F A E
 
AT5G52260.1     W I - - - - - - S S S N P H I - - - - - D Y S S A F T D S K H I N - - - - - - - - - - - E T Q D Q I N E - - - - - - - -
pt022949_POPTR_    W L S L D S F A S S G E P V V S K S T F D H N P S F Q D T S F M H H Y L L E E G A F G G D Y Q N S L S D G S S G D I F S
 
AT5G52260.1     - - - - - E E V M M I N N N N Y S S L E D V M L R T D F L Q P D H E Y A N Y Y S S G D F F I N S D Q N Y V
pt022949_POPTR_    S E F K F E S Q S P G N E F D F S S G E D L C - - - - - - - - - R E F - N F R N I G D V M - - - - - - Y I
 
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