fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt027423 not found in 295aa AT5G52260.1 1st_1st 0.424242424 Ia
Pt022949 not found in 325aa AT5G52260.1 not_1st 0.4 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G52260.1     ---------------------------------MTKSGE----RPKQRQRKGLWSPEEDQ
pt027423_POPTR_ --------------------------------MGCKSSDMPKLKPKPKHRKGLWSPEEDQ
pt022949_POPTR_ MPKAFIASITKSKTLFLLYKSPILLIIGVLGEMGCKSSDKP--KPKLRHRKGLWSPEEDQ
                                                   **.:    :** ::***********

AT5G52260.1     KLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLKRGSFSEEEEETILTLHS
pt027423_POPTR_ RLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYLRPGLKRGTFSAQEEETILALHH
pt022949_POPTR_ RLGSYVFQHGHGCWSSVPINAGLQRTGKSCRLRWINYLRPGLKRGAFSTDEEETILTLHR
                :* .:::.:**.**::*** *****.*******************:** :******:** 

AT5G52260.1     SLGNKWSRIAKYLPGRTDNEIKNYWHSYLKKRWLKSQ----------PQLKSQISDLTES
pt027423_POPTR_ MLGNKWSQIAQHLPGRTDNEIKNHWHSYLKKNLLKDEGMESLKRTKSDSSNSDIMELSPS
pt022949_POPTR_ MLGNKWSQIAQHLPGRTDNEIKNHWHSYLKKKLFKAEGMESPNKTQSASSNSDNMDLSPS
                 ******:**::***********:*******. :* :           . :*:  :*: *

AT5G52260.1     PSSLLSCGKRNLETETLDHVISFQKFSENPTSS--PS-----KESNNNMIMNNSNNLPKL
pt027423_POPTR_ PKRL------KMQASSFESSMSAEKSSADINRSV-PQMFESPNEP------KGSSLLPKV
pt022949_POPTR_ PKRL------KMQSP--ESSMNMEKPSTDIDRPVLPRMFDYLKEP------NRSSLLPKV
                *. *      ::::   :  :. :* * :   .  *      :*.      : *. ***:

AT5G52260.1     FFSEWIS-----------SSNPHIDYSSAFTDSKHINETQDQINEEEVMMINNNNYSSLE
pt027423_POPTR_ MFAEWLSLESFASLGEPMDSKTTLDHNTIFQD----NFLHDYLLDERAF--GGEYHNSLS
pt022949_POPTR_ MFAEWLSLDSFASSGEPVVSKSTFDHNPSFQDT---SFMHHYLLEEGAF--GGDYQNSLS
                :*:**:*            *:. :*:.. * *    .  :. : :* .:  ..:  .**.

AT5G52260.1     D--------VMLRTDFLQPDHEYANYYSSG-----DFFIN--SDQNYV
pt027423_POPTR_ DGSSGDIFSSEFRFESQSPGNEFD--FSSGEDLCSDFNLSNISDVMYI
pt022949_POPTR_ DGSSGDIFSSEFKFESQSPGNEFD--FSSGEDLCREFNFRNIGDVMYI
                *          :: :  .*.:*:   :***     :* :   .*  *:
BoxShade v3.31 C (beta, 970507) Output
AT5G52260.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M T K S G E - - - - R P K Q R Q R K G L W S P E E D Q
pt027423_POPTR_    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M G C K S S D M P K L K P K P K H R K G L W S P E E D Q
pt022949_POPTR_    M P K A F I A S I T K S K T L F L L Y K S P I L L I I G V L G E M G C K S S D K P - - K P K L R H R K G L W S P E E D Q
 
AT5G52260.1     K L K S F I L S R G H A C W T T V P I L A G L Q R N G K S C R L R W I N Y L R P G L K R G S F S E E E E E T I L T L H S
pt027423_POPTR_    R L R N Y V L K H G H G C W S S V P I N A G L Q R N G K S C R L R W I N Y L R P G L K R G T F S A Q E E E T I L A L H H
pt022949_POPTR_    R L G S Y V F Q H G H G C W S S V P I N A G L Q R T G K S C R L R W I N Y L R P G L K R G A F S T D E E E T I L T L H R
 
AT5G52260.1     S L G N K W S R I A K Y L P G R T D N E I K N Y W H S Y L K K R W L K S Q - - - - - - - - - - P Q L K S Q I S D L T E S
pt027423_POPTR_    M L G N K W S Q I A Q H L P G R T D N E I K N H W H S Y L K K N L L K D E G M E S L K R T K S D S S N S D I M E L S P S
pt022949_POPTR_    M L G N K W S Q I A Q H L P G R T D N E I K N H W H S Y L K K K L F K A E G M E S P N K T Q S A S S N S D N M D L S P S
 
AT5G52260.1     P S S L L S C G K R N L E T E T L D H V I S F Q K F S E N P T S S - - P S - - - - - K E S N N N M I M N N S N N L P K L
pt027423_POPTR_    P K R L - - - - - - K M Q A S S F E S S M S A E K S S A D I N R S V - P Q M F E S P N E P - - - - - - K G S S L L P K V
pt022949_POPTR_    P K R L - - - - - - K M Q S P - - E S S M N M E K P S T D I D R P V L P R M F D Y L K E P - - - - - - N R S S L L P K V
 
AT5G52260.1     F F S E W I S - - - - - - - - - - - S S N P H I D Y S S A F T D S K H I N E T Q D Q I N E E E V M M I N N N N Y S S L E
pt027423_POPTR_    M F A E W L S L E S F A S L G E P M D S K T T L D H N T I F Q D - - - - N F L H D Y L L D E R A F - - G G E Y H N S L S
pt022949_POPTR_    M F A E W L S L D S F A S S G E P V V S K S T F D H N P S F Q D T - - - S F M H H Y L L E E G A F - - G G D Y Q N S L S
 
AT5G52260.1     D - - - - - - - - V M L R T D F L Q P D H E Y A N Y Y S S G - - - - - D F F I N - - S D Q N Y V
pt027423_POPTR_    D G S S G D I F S S E F R F E S Q S P G N E F D - - F S S G E D L C S D F N L S N I S D V M Y I
pt022949_POPTR_    D G S S G D I F S S E F K F E S Q S P G N E F D - - F S S G E D L C R E F N F R N I G D V M Y I
 
0