fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52260.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028639 not found in 270aa AT3G48920.1 1st_not 0.412121212 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G52260.1     -MTKSGERPKQRQRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWIN
gm028639_Glyma1 MGFQPMEKGKAKHKKGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWIN
                   :. *: * :::*********:**:..**.:**.**::*** ****************

AT5G52260.1     YLRPGLKRGSFSEEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSYLKKRWLK-
gm028639_Glyma1 YLRPGLKRGKFSKQEEETILTLHDMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKRVAKA
                *********.**::*********. ******:*:::********************  * 

AT5G52260.1     ----SQPQLK--SQISDLTESPSSLLSCGKRNLETETLDHVISFQKFSENPTSSPSKESN
gm028639_Glyma1 KEMESHNQIKYASSSSDTIDSSNSI-----QKLATQG-QQIYNFTK--ESCQSS------
                    *: *:*  *. **  :*..*:     ::* *:  ::: .* *  *.  **      

AT5G52260.1     NNMIMNNSNNLPKLFFSEWIS-----SSNP--------HIDYSSAFTDSK----------
gm028639_Glyma1 ----------LPKLLFAEWLSLDHVNSANSVESLGLRNGFDHNSTFQEAAIHDMSEVPFG
                          ****:*:**:*     *:*.         :*:.*:* ::           

AT5G52260.1     -HINETQDQINEEEVMMINNNNYSSLEDVMLRTDFLQPDHEYANYYSSGDFFINSDQ-NY
gm028639_Glyma1 GDYNRCVSNIPAPEMF----NSQLKYANQMVENGYI---HCMPGFDLSSNFSMSNDAIMY
                 . *.  .:*   *::    *.  .  : *:...::   *  ..:  *.:* :..*   *

AT5G52260.1     V
gm028639_Glyma1 I
                :
BoxShade v3.31 C (beta, 970507) Output
AT5G52260.1     - M T K S G E R P K Q R Q R K G L W S P E E D Q K L K S F I L S R G H A C W T T V P I L A G L Q R N G K S C R L R W I N
gm028639_Glyma1    M G F Q P M E K G K A K H K K G L W S P E E D N K L R N H I L K H G H G C W S S V P I K A G L Q R N G K S C R L R W I N
 
AT5G52260.1     Y L R P G L K R G S F S E E E E E T I L T L H S S L G N K W S R I A K Y L P G R T D N E I K N Y W H S Y L K K R W L K -
gm028639_Glyma1    Y L R P G L K R G K F S K Q E E E T I L T L H D M L G N K W S Q I S Q H L P G R T D N E I K N Y W H S Y L K K R V A K A
 
AT5G52260.1     - - - - S Q P Q L K - - S Q I S D L T E S P S S L L S C G K R N L E T E T L D H V I S F Q K F S E N P T S S P S K E S N
gm028639_Glyma1    K E M E S H N Q I K Y A S S S S D T I D S S N S I - - - - - Q K L A T Q G - Q Q I Y N F T K - - E S C Q S S - - - - - -
 
AT5G52260.1     N N M I M N N S N N L P K L F F S E W I S - - - - - S S N P - - - - - - - - H I D Y S S A F T D S K - - - - - - - - - -
gm028639_Glyma1    - - - - - - - - - - L P K L L F A E W L S L D H V N S A N S V E S L G L R N G F D H N S T F Q E A A I H D M S E V P F G
 
AT5G52260.1     - H I N E T Q D Q I N E E E V M M I N N N N Y S S L E D V M L R T D F L Q P D H E Y A N Y Y S S G D F F I N S D Q - N Y
gm028639_Glyma1    G D Y N R C V S N I P A P E M F - - - - N S Q L K Y A N Q M V E N G Y I - - - H C M P G F D L S S N F S M S N D A I M Y
 
AT5G52260.1     V
gm028639_Glyma1    I
 
0