fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52600.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028311 not found in 215aa AT3G13540.1 1st_not 0.422330097 II
Pt005212 not found in 233aa AT5G52600.1 not_1st 0.483009708 II
Sm003502 not found in 128aa AT3G61250.1 1st_not 0.407766990 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G52600.1     -----MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRL
pt005212_POPTR_ -----MESKGAKPHE-FKKGLWKPEEDLILKTYVETHGEGNWSTVSKRSGLMRCGKSCRL
Sm003502_Selmo1 MGRA--PCCSKVG---LNRGPWTPEEDMLLTKHIEQHGEGNWRALPKAAGLLRCGKSCRL
gm028311_Glyma1 MKRKAMSCDNRDA---VNRGAWSAEEDQILINYVQAHGEGNWRELSKRAGLKRRGKSCRL
                       .        .::* *..*** :* .::: ******  :.: :** * ******

AT5G52600.1     RWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK
pt005212_POPTR_ RWKNYLRPNIRRGGMSQDEEDMIIRMHKLLGNRWSLIAGRLPGRTDNDVKNYWNTHLNKR
Sm003502_Selmo1 RWVNYLRPNVKRGNISEDEEDLIIMLHALLGNRWSLIAARMPGRTDNEIKNYWNTHLSKK
gm028311_Glyma1 RWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKK
                ** ***:*:::**.:* :*:*:** :* **********.*:******::******:* *:

AT5G52600.1     P------------------NS------------------RRQNAPESIVGAT----PFTD
pt005212_POPTR_ CPSRKRKTIDSKPDQNDN-NT------------------KKQYRSKRIRSLSNSQPTCNT
Sm003502_Selmo1 L-----------------------------------------------------------
gm028311_Glyma1 VE------------QNHNYNSNLPGHDNIPIKLRIESPRRSKNSLGIVIDPTKSSHPMTI
                                                                            

AT5G52600.1     KPVMSTELRRSHGEGGEEESNTWME---ETNHFGYDVHVGSPLPLISH----YPDNTLVF
pt005212_POPTR_ SPIGSTEELEGKNQEKEERSAVISDAWIQQDAQSMNSCIESPMVLHNNATFFFEDDP--F
Sm003502_Selmo1 ------------------------------ASRGLDPKTHKP------------------
gm028311_Glyma1 KSMRCTEVMMP--------TRSVND---FTTSWDINPSASTPQDGHDH----CSEG---F
                                                 . :    .*                  

AT5G52600.1     DPCFSFTDFFPLL-------
pt005212_POPTR_ LTYWDSFDMFESLGCGGDYW
Sm003502_Selmo1 --------------------
gm028311_Glyma1 LKHFGISD------------
BoxShade v3.31 C (beta, 970507) Output
AT5G52600.1     - - - - - M E C K R E E G K S Y V K R G L W K P E E D M I L K S Y V E T H G E G N W A D I S R R S G L K R G G K S C R L
pt005212_POPTR_    - - - - - M E S K G A K P H E - F K K G L W K P E E D L I L K T Y V E T H G E G N W S T V S K R S G L M R C G K S C R L
Sm003502_Selmo1    M G R A - - P C C S K V G - - - L N R G P W T P E E D M L L T K H I E Q H G E G N W R A L P K A A G L L R C G K S C R L
gm028311_Glyma1    M K R K A M S C D N R D A - - - V N R G A W S A E E D Q I L I N Y V Q A H G E G N W R E L S K R A G L K R R G K S C R L
 
AT5G52600.1     R W K N Y L R P N I K R G S M S P Q E Q D L I I R M H K L L G N R W S L I A G R L P G R T D N E V K N Y W N T H L N K K
pt005212_POPTR_    R W K N Y L R P N I R R G G M S Q D E E D M I I R M H K L L G N R W S L I A G R L P G R T D N D V K N Y W N T H L N K R
Sm003502_Selmo1    R W V N Y L R P N V K R G N I S E D E E D L I I M L H A L L G N R W S L I A A R M P G R T D N E I K N Y W N T H L S K K
gm028311_Glyma1    R W L N Y L K P D I K R G N I S S D E E D L I I R L H S L L G N R W S L I A G R L P G R T D N E I K N Y W N T Y L R K K
 
AT5G52600.1     P - - - - - - - - - - - - - - - - - - N S - - - - - - - - - - - - - - - - - - R R Q N A P E S I V G A T - - - - P F T D
pt005212_POPTR_    C P S R K R K T I D S K P D Q N D N - N T - - - - - - - - - - - - - - - - - - K K Q Y R S K R I R S L S N S Q P T C N T
Sm003502_Selmo1    L - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm028311_Glyma1    V E - - - - - - - - - - - - Q N H N Y N S N L P G H D N I P I K L R I E S P R R S K N S L G I V I D P T K S S H P M T I
 
AT5G52600.1     K P V M S T E L R R S H G E G G E E E S N T W M E - - - E T N H F G Y D V H V G S P L P L I S H - - - - Y P D N T L V F
pt005212_POPTR_    S P I G S T E E L E G K N Q E K E E R S A V I S D A W I Q Q D A Q S M N S C I E S P M V L H N N A T F F F E D D P - - F
Sm003502_Selmo1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A S R G L D P K T H K P - - - - - - - - - - - - - - - - - -
gm028311_Glyma1    K S M R C T E V M M P - - - - - - - - T R S V N D - - - F T T S W D I N P S A S T P Q D G H D H - - - - C S E G - - - F
 
AT5G52600.1     D P C F S F T D F F P L L - - - - - - -
pt005212_POPTR_    L T Y W D S F D M F E S L G C G G D Y W
Sm003502_Selmo1    - - - - - - - - - - - - - - - - - - - -
gm028311_Glyma1    L K H F G I S D - - - - - - - - - - - -
 
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