fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52600.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt009128 not found in 230aa AT5G52600.1 1st_1st 0.504854368 Ia
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G52600.1     MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNY
pt009128_POPTR_ MESR--EAKPKAKKGLWKPEEDLILKTYVETHGEGNWSTVSKKSGLMRGGKSCRLRWKNY
                **.:  *.*. .*:********:***:**********: :*::*** *************

AT5G52600.1     LRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK-PNSR
pt009128_POPTR_ LRPNIKRGGMSQEEEDMIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKRLPSGK
                ********.** :*:*:*************************************: *..:

AT5G52600.1     RQNAPESIVGATPFTD------------------------KPVMSTELRRSHGEGGEEE-
pt009128_POPTR_ RKST-----DSNPDQDDNNTKENKSKRLRALGDSQPTGNTSPIGSTEELEGKNQEKEERS
                *:.:     .:.*  *                        .*: ***  ..:.:  **. 

AT5G52600.1     --SNTWMEETNHFGYDVHVGSPLPLISHYPDN--TLVFD--PCFSFTDFFPLL-------
pt009128_POPTR_ AVSDVWAQQDAQSMMNYYIESPM-----VPDNNATFVFDDEPFLAYWDSFVLFESVGCGG
                  *:.* ::  :   : :: **:      ***  *:***  * ::: * * *:       

AT5G52600.1     --
pt009128_POPTR_ DW
BoxShade v3.31 C (beta, 970507) Output
AT5G52600.1     M E C K R E E G K S Y V K R G L W K P E E D M I L K S Y V E T H G E G N W A D I S R R S G L K R G G K S C R L R W K N Y
pt009128_POPTR_    M E S R - - E A K P K A K K G L W K P E E D L I L K T Y V E T H G E G N W S T V S K K S G L M R G G K S C R L R W K N Y
 
AT5G52600.1     L R P N I K R G S M S P Q E Q D L I I R M H K L L G N R W S L I A G R L P G R T D N E V K N Y W N T H L N K K - P N S R
pt009128_POPTR_    L R P N I K R G G M S Q E E E D M I I R M H K L L G N R W S L I A G R L P G R T D N E V K N Y W N T H L N K R L P S G K
 
AT5G52600.1     R Q N A P E S I V G A T P F T D - - - - - - - - - - - - - - - - - - - - - - - - K P V M S T E L R R S H G E G G E E E -
pt009128_POPTR_    R K S T - - - - - D S N P D Q D D N N T K E N K S K R L R A L G D S Q P T G N T S P I G S T E E L E G K N Q E K E E R S
 
AT5G52600.1     - - S N T W M E E T N H F G Y D V H V G S P L P L I S H Y P D N - - T L V F D - - P C F S F T D F F P L L - - - - - - -
pt009128_POPTR_    A V S D V W A Q Q D A Q S M M N Y Y I E S P M - - - - - V P D N N A T F V F D D E P F L A Y W D S F V L F E S V G C G G
 
AT5G52600.1     - -
pt009128_POPTR_    D W
 
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