fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52600.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt005212 not found in 233aa AT5G52600.1 not_1st 0.483009708 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G52600.1     MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNY
pt005212_POPTR_ MESKGAKPHEF-KKGLWKPEEDLILKTYVETHGEGNWSTVSKRSGLMRCGKSCRLRWKNY
                **.*  : :.: *:********:***:**********: :*:**** * ***********

AT5G52600.1     LRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRR
pt005212_POPTR_ LRPNIRRGGMSQDEEDMIIRMHKLLGNRWSLIAGRLPGRTDNDVKNYWNTHLNKRCPSRK
                *****:**.** :*:*:*************************:***********:  **:

AT5G52600.1     Q----NAPE----------------SIVGATPFTD-KPVMSTELRRSHGEGGEEE----S
pt005212_POPTR_ RKTIDSKPDQNDNNTKKQYRSKRIRSLSNSQPTCNTSPIGSTEELEGKNQEKEERSAVIS
                :    . *:                *: .: *  : .*: ***  ..:.:  **.    *

AT5G52600.1     NTWMEETNHFGYDVHVGSPLPLISHYPDNTLVF--DPCFSFTDFFPLL----------
pt005212_POPTR_ DAWIQQDAQ-SMNSCIESPMVL---HNNATFFFEDDPFLTYWDSFDMFESLGCGGDYW
                ::*:::  : . :  : **: *   : : *:.*  ** ::: * * ::
BoxShade v3.31 C (beta, 970507) Output
AT5G52600.1     M E C K R E E G K S Y V K R G L W K P E E D M I L K S Y V E T H G E G N W A D I S R R S G L K R G G K S C R L R W K N Y
pt005212_POPTR_    M E S K G A K P H E F - K K G L W K P E E D L I L K T Y V E T H G E G N W S T V S K R S G L M R C G K S C R L R W K N Y
 
AT5G52600.1     L R P N I K R G S M S P Q E Q D L I I R M H K L L G N R W S L I A G R L P G R T D N E V K N Y W N T H L N K K P N S R R
pt005212_POPTR_    L R P N I R R G G M S Q D E E D M I I R M H K L L G N R W S L I A G R L P G R T D N D V K N Y W N T H L N K R C P S R K
 
AT5G52600.1     Q - - - - N A P E - - - - - - - - - - - - - - - - S I V G A T P F T D - K P V M S T E L R R S H G E G G E E E - - - - S
pt005212_POPTR_    R K T I D S K P D Q N D N N T K K Q Y R S K R I R S L S N S Q P T C N T S P I G S T E E L E G K N Q E K E E R S A V I S
 
AT5G52600.1     N T W M E E T N H F G Y D V H V G S P L P L I S H Y P D N T L V F - - D P C F S F T D F F P L L - - - - - - - - - -
pt005212_POPTR_    D A W I Q Q D A Q - S M N S C I E S P M V L - - - H N N A T F F F E D D P F L T Y W D S F D M F E S L G C G G D Y W
 
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