fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G52600.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm028311 not found in 215aa AT3G13540.1 1st_not 0.422330097 II
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G52600.1     -----MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRL
gm028311_Glyma1 MKRKAMSC---DNRDAVNRGAWSAEEDQILINYVQAHGEGNWRELSKRAGLKRRGKSCRL
                     *.*   :.:. *:** *..*** ** .**::****** ::*:*:**** ******

AT5G52600.1     RWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK
gm028311_Glyma1 RWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKK
                ** ***:*:****.:*.:*:*****:*.********************:******:*.**

AT5G52600.1     -----------------------PNSRRQNAPESIV-----GATPFTDKPVMSTEL---R
gm028311_Glyma1 VEQNHNYNSNLPGHDNIPIKLRIESPRRSKNSLGIVIDPTKSSHPMTIKSMRCTEVMMPT
                                        ..**.: . .**     .: *:* *.: .**:    

AT5G52600.1     RSHGEGGEEESNTWMEETNHF--GYDVHVGSPLPLISHYPDNTLVFDPC-------FSFT
gm028311_Glyma1 RS---------------VNDFTTSWDINPSASTPQDGH--------DHCSEGFLKHFGIS
                **               .*.*  .:*:: .:. *  .*        * *       *.::

AT5G52600.1     DFFPLL
gm028311_Glyma1 D-----
                *
BoxShade v3.31 C (beta, 970507) Output
AT5G52600.1     - - - - - M E C K R E E G K S Y V K R G L W K P E E D M I L K S Y V E T H G E G N W A D I S R R S G L K R G G K S C R L
gm028311_Glyma1    M K R K A M S C - - - D N R D A V N R G A W S A E E D Q I L I N Y V Q A H G E G N W R E L S K R A G L K R R G K S C R L
 
AT5G52600.1     R W K N Y L R P N I K R G S M S P Q E Q D L I I R M H K L L G N R W S L I A G R L P G R T D N E V K N Y W N T H L N K K
gm028311_Glyma1    R W L N Y L K P D I K R G N I S S D E E D L I I R L H S L L G N R W S L I A G R L P G R T D N E I K N Y W N T Y L R K K
 
AT5G52600.1     - - - - - - - - - - - - - - - - - - - - - - - P N S R R Q N A P E S I V - - - - - G A T P F T D K P V M S T E L - - - R
gm028311_Glyma1    V E Q N H N Y N S N L P G H D N I P I K L R I E S P R R S K N S L G I V I D P T K S S H P M T I K S M R C T E V M M P T
 
AT5G52600.1     R S H G E G G E E E S N T W M E E T N H F - - G Y D V H V G S P L P L I S H Y P D N T L V F D P C - - - - - - - F S F T
gm028311_Glyma1    R S - - - - - - - - - - - - - - - V N D F T T S W D I N P S A S T P Q D G H - - - - - - - - D H C S E G F L K H F G I S
 
AT5G52600.1     D F F P L L
gm028311_Glyma1    D - - - - -
 
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