fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G53200.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029528 not found in 79aa AT5G53200.1 1st_1st 0.424107142 Ia
Pt023384 not found in 97aa AT5G53200.1 1st_1st 0.607142857 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G53200.1     MDNTD--RRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGR
pt023384_POPTR_ MESMDRRRRRRRKQAKINNSESEEVSSIEWEFIDMSEQEEDLIYRMYRLVGERWDLIAGR
gm029528_Glyma1 MSTTA--------------TTTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAGR
                *..                  :.**** **:.*.*:******* ***:***::*:*****

AT5G53200.1     VPGRQPEEIERYWIMRNSEGFADKRRQLHSSSHKHTKPHRPRFSIYPS
pt023384_POPTR_ IPGRKAEEIERFWIMKHREGFAEKRR-LHSKA--KSKTYR--------
gm029528_Glyma1 IPSRKAEEIERFWIMRHGDAFSVKRH--------RSKAQDS-------
                :*.*:.*****:***:: :.*: **:        ::*.
BoxShade v3.31 C (beta, 970507) Output
AT5G53200.1     M D N T D - - R R R R R K Q H K I A L H D S E E V S S I E W E F I N M T E Q E E D L I F R M Y R L V G D R W D L I A G R
pt023384_POPTR_    M E S M D R R R R R R R K Q A K I N N S E S E E V S S I E W E F I D M S E Q E E D L I Y R M Y R L V G E R W D L I A G R
gm029528_Glyma1    M S T T A - - - - - - - - - - - - - - T T T S E V S S N E W K V I H M S E Q E E D L I R R M Y K L V G D K W N L I A G R
 
AT5G53200.1     V P G R Q P E E I E R Y W I M R N S E G F A D K R R Q L H S S S H K H T K P H R P R F S I Y P S
pt023384_POPTR_    I P G R K A E E I E R F W I M K H R E G F A E K R R - L H S K A - - K S K T Y R - - - - - - - -
gm029528_Glyma1    I P S R K A E E I E R F W I M R H G D A F S V K R H - - - - - - - - R S K A Q D S - - - - - - -
 
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