fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G53200.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm029528 not found in 79aa AT5G53200.1 1st_1st 0.424107142 Ia
Pt023384 not found in 97aa AT5G53200.1 1st_1st 0.607142857 Ia
Pt026754 not found in 95aa AT5G53200.1 not_1st 0.580357142 II
Pt039931 not found in 92aa AT5G53200.1 not_1st 0.5625 II
Pt016529 not found in 88aa AT2G46410.1 not_not 0.53125 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G53200.1     MDNTD--RRRRRKQHKIALHDSE-EVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAG
gm029528_Glyma1 ---MS------------TTATTTSEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAG
pt039931_POPTR_ ---MD---RRRRKQAKTTTHCSDQEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAG
pt026754_POPTR_ MESMN--RRRRRKQPKINSSESE-EVSSIEWEFINMSEQEEDLIYRMHRLVGERWDLIAG
pt016529_POPTR_ ---MD---RRRKKQAKTTSCCSEQEVSSIEWEFINMSEQEEDLIYRMHNLVGDRWALIAG
pt023384_POPTR_ MESMDRRRRRRRKQAKINNSESE-EVSSIEWEFIDMSEQEEDLIYRMYRLVGERWDLIAG
                    .                :  **** **:.*.*:******* **:.***::* ****

AT5G53200.1     RVPGRQPEEIERYWIMRNSEGFADKRRQLHSSSHKHTKPHRPRFSIYPS
gm029528_Glyma1 RIPSRKAEEIERFWIMRHGDAFSVKRHRSKAQDS---------------
pt039931_POPTR_ RIPGRKAEEIERYWIMRHCEGFASRRKEQKRDVIPNTS-----------
pt026754_POPTR_ RIPGRKAEEIERFWIMKHREGFAENGK-LYNEVKSRTSS----------
pt016529_POPTR_ RIPGRKAEEIERFWLMRHGEGFASRRREQKRCHS---------------
pt023384_POPTR_ RIPGRKAEEIERFWIMKHREGFAEKRR-LHSKAKSKTYR----------
                *:*.*:.*****:*:*:: :.*: . :
BoxShade v3.31 C (beta, 970507) Output
AT5G53200.1     M D N T D - - R R R R R K Q H K I A L H D S E - E V S S I E W E F I N M T E Q E E D L I F R M Y R L V G D R W D L I A G
gm029528_Glyma1    - - - M S - - - - - - - - - - - - T T A T T T S E V S S N E W K V I H M S E Q E E D L I R R M Y K L V G D K W N L I A G
pt039931_POPTR_    - - - M D - - - R R R R K Q A K T T T H C S D Q E V S S I E W E F I N M S E Q E E D L I Y R M Y K L V G D R W A L I A G
pt026754_POPTR_    M E S M N - - R R R R R K Q P K I N S S E S E - E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E R W D L I A G
pt016529_POPTR_    - - - M D - - - R R R K K Q A K T T S C C S E Q E V S S I E W E F I N M S E Q E E D L I Y R M H N L V G D R W A L I A G
pt023384_POPTR_    M E S M D R R R R R R R K Q A K I N N S E S E - E V S S I E W E F I D M S E Q E E D L I Y R M Y R L V G E R W D L I A G
 
AT5G53200.1     R V P G R Q P E E I E R Y W I M R N S E G F A D K R R Q L H S S S H K H T K P H R P R F S I Y P S
gm029528_Glyma1    R I P S R K A E E I E R F W I M R H G D A F S V K R H R S K A Q D S - - - - - - - - - - - - - - -
pt039931_POPTR_    R I P G R K A E E I E R Y W I M R H C E G F A S R R K E Q K R D V I P N T S - - - - - - - - - - -
pt026754_POPTR_    R I P G R K A E E I E R F W I M K H R E G F A E N G K - L Y N E V K S R T S S - - - - - - - - - -
pt016529_POPTR_    R I P G R K A E E I E R F W L M R H G E G F A S R R R E Q K R C H S - - - - - - - - - - - - - - -
pt023384_POPTR_    R I P G R K A E E I E R F W I M K H R E G F A E K R R - L H S K A K S K T Y R - - - - - - - - - -
 
0