fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G53200.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt026754 not found in 95aa AT5G53200.1 not_1st 0.580357142 II
Pt039931 not found in 92aa AT5G53200.1 not_1st 0.5625 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G53200.1     MDNTDRRRRRKQHKIALHDS-EEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRV
pt039931_POPTR_ MD----RRRRKQAKTTTHCSDQEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRI
pt026754_POPTR_ MESMNRRRRRKQPKINSSES-EEVSSIEWEFINMSEQEEDLIYRMHRLVGERWDLIAGRI
                *:    ****** *     * :************:*******:**::***:** *****:

AT5G53200.1     PGRQPEEIERYWIMRNSEGFADKRRQLHSSSHKHTKPHRPRFSIYPS
pt039931_POPTR_ PGRKAEEIERYWIMRHCEGFASRRKEQKRDVIPNTS-----------
pt026754_POPTR_ PGRKAEEIERFWIMKHREGFAENGK-LYNEVKSRTSS----------
                ***:.*****:***:: ****.. :    .   .*.
BoxShade v3.31 C (beta, 970507) Output
AT5G53200.1     M D N T D R R R R R K Q H K I A L H D S - E E V S S I E W E F I N M T E Q E E D L I F R M Y R L V G D R W D L I A G R V
pt039931_POPTR_    M D - - - - R R R R K Q A K T T T H C S D Q E V S S I E W E F I N M S E Q E E D L I Y R M Y K L V G D R W A L I A G R I
pt026754_POPTR_    M E S M N R R R R R K Q P K I N S S E S - E E V S S I E W E F I N M S E Q E E D L I Y R M H R L V G E R W D L I A G R I
 
AT5G53200.1     P G R Q P E E I E R Y W I M R N S E G F A D K R R Q L H S S S H K H T K P H R P R F S I Y P S
pt039931_POPTR_    P G R K A E E I E R Y W I M R H C E G F A S R R K E Q K R D V I P N T S - - - - - - - - - - -
pt026754_POPTR_    P G R K A E E I E R F W I M K H R E G F A E N G K - L Y N E V K S R T S S - - - - - - - - - -
 
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