fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G53200.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016529 not found in 88aa AT2G46410.1 not_not 0.53125 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G53200.1     MDNTDRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVP
pt016529_POPTR_ ---MDRRRKKQAKTTSCCSEQEVSSIEWEFINMSEQEEDLIYRMHNLVGDRWALIAGRIP
                    ****::: :. :  ..:************:*******:**:.****** *****:*

AT5G53200.1     GRQPEEIERYWIMRNSEGFADKRRQ---LHSSSHKHTKPHRPRFSIYPS
pt016529_POPTR_ GRKAEEIERFWLMRHGEGFASRRREQKRCHS------------------
                **:.*****:*:**:.****.:**:    **
BoxShade v3.31 C (beta, 970507) Output
AT5G53200.1     M D N T D R R R R R K Q H K I A L H D S E E V S S I E W E F I N M T E Q E E D L I F R M Y R L V G D R W D L I A G R V P
pt016529_POPTR_    - - - M D R R R K K Q A K T T S C C S E Q E V S S I E W E F I N M S E Q E E D L I Y R M H N L V G D R W A L I A G R I P
 
AT5G53200.1     G R Q P E E I E R Y W I M R N S E G F A D K R R Q - - - L H S S S H K H T K P H R P R F S I Y P S
pt016529_POPTR_    G R K A E E I E R F W L M R H G E G F A S R R R E Q K R C H S - - - - - - - - - - - - - - - - - -
 
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