fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G54470.1 VVKRTRLDLDLNLSDE at 155/215 in AT5G54470.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp006212 not found in 377aa AT5G54470.1 1st_1st 0.293939393 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G54470.1     MGKKK--CELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWK
pp006212_Pp1s22 MARTNTACELCDGVAALYCEADEAHICWICDAKVHSANFLVARHTRSVLCGTCGTQTSWR
                *.:.:  **** *** :***:*:* :** **.***.******:* *.:**.:* ::*.*:

AT5G54470.1     ASGLNLGPTVSIC----------------------------ESC------------LARK
pp006212_Pp1s22 ASGANPTPLPGVCAECSQGEAQGECITLNDGNVIDTARVTAESCESAVIFETEFSQVSSC
                *** *  *  .:*                            ***            ::  

AT5G54470.1     KNNNSSLAGRDQNLNQEEEIIGCNDGAESYDEESDEDEEEEEVENQVVPAAVEQELPV--
pp006212_Pp1s22 ESSHSQLSSYD----SEGVIVDCGSAHASVSSGISKSLKRKRSLHSLLPVSVPQSKQIAM
                :..:*.*:. *    .*  *:.*...  * ..  .:. :.:.  :.::*.:* *.  :  

AT5G54470.1     --------------------VSSSSSVSS-----------------------GEGDQVV-
pp006212_Pp1s22 RVLEDVNSSDAHRQCKCDSTTSSSSSTGSNSRANQDSSFEERGDNRTQFPEFGNTNRVVT
                                    .*****..*                       *: ::** 

AT5G54470.1     -------KRTRLD-------------------------------LDLNLSDEENQSRPLK
pp006212_Pp1s22 NHLLSSAKRQRMDDRVQTMSSFAPAQESAVLSISRSMRTLAKWHWDLHLSSPGTVPLALR
                       ** *:*                                **:**.  . . .*:

AT5G54470.1     ---RLSR--------------------------DE---------------GLSRSTVVMN
pp006212_Pp1s22 MFCKVSRALTPTLFSNSGRRVALAACLRLAAVLDEAQITVPNSGKVAACAGVSARRLAMT
                   ::**                          **               *:*   :.*.

AT5G54470.1     S-SIVKLHGGRRKAEGCDTSSSSSFY
pp006212_Pp1s22 ELHLLALLGSRRLPVWASSRT-----
                .  :: * *.** .  ..: :
BoxShade v3.31 C (beta, 970507) Output
AT5G54470.1     M G K K K - - C E L C C G V A R M Y C E S D Q A S L C W D C D G K V H G A N F L V A K H M R C L L C S A C Q S H T P W K
pp006212_Pp1s22    M A R T N T A C E L C D G V A A L Y C E A D E A H I C W I C D A K V H S A N F L V A R H T R S V L C G T C G T Q T S W R
 
AT5G54470.1     A S G L N L G P T V S I C - - - - - - - - - - - - - - - - - - - - - - - - - - - - E S C - - - - - - - - - - - - L A R K
pp006212_Pp1s22    A S G A N P T P L P G V C A E C S Q G E A Q G E C I T L N D G N V I D T A R V T A E S C E S A V I F E T E F S Q V S S C
 
AT5G54470.1     K N N N S S L A G R D Q N L N Q E E E I I G C N D G A E S Y D E E S D E D E E E E E V E N Q V V P A A V E Q E L P V - -
pp006212_Pp1s22    E S S H S Q L S S Y D - - - - S E G V I V D C G S A H A S V S S G I S K S L K R K R S L H S L L P V S V P Q S K Q I A M
 
AT5G54470.1     - - - - - - - - - - - - - - - - - - - - V S S S S S V S S - - - - - - - - - - - - - - - - - - - - - - - G E G D Q V V -
pp006212_Pp1s22    R V L E D V N S S D A H R Q C K C D S T T S S S S S T G S N S R A N Q D S S F E E R G D N R T Q F P E F G N T N R V V T
 
AT5G54470.1     - - - - - - - K R T R L D - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - L D L N L S D E E N Q S R P L K
pp006212_Pp1s22    N H L L S S A K R Q R M D D R V Q T M S S F A P A Q E S A V L S I S R S M R T L A K W H W D L H L S S P G T V P L A L R
 
AT5G54470.1     - - - R L S R - - - - - - - - - - - - - - - - - - - - - - - - - - D E - - - - - - - - - - - - - - - G L S R S T V V M N
pp006212_Pp1s22    M F C K V S R A L T P T L F S N S G R R V A L A A C L R L A A V L D E A Q I T V P N S G K V A A C A G V S A R R L A M T
 
AT5G54470.1     S - S I V K L H G G R R K A E G C D T S S S S S F Y
pp006212_Pp1s22    E L H L L A L L G S R R L P V W A S S R T - - - - -
 
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