fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G54470.1 VVKRTRLDLDLNLSDE at 155/215 in AT5G54470.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb030563 not found in 379aa AT5G54470.1 1st_1st 0.327272727 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G54470.1     MGKKKCELCCGVARMYCESDQASL-----------CWDCD-GKVHGANFL----------
Sb030563_Sorbi1 LASSSTPVTCCLPQVKSFRPMPALEQFLAGVPLPDCADPELKKSEGDLFLWREEARNRPP
                :....  : * :.:: .    .:*           * * :  * .*  **          

AT5G54470.1     ----VAKHMRCLLCSACQSHTPWKASGLNLGPTVSICE-----------SCLARKKNNNS
Sb030563_Sorbi1 FREEVASSLRPPWCA---DDKWWHRPG---------CEVEHGMFSFAQSAALA-------
                    **. :*   *:   ... *: .*         **           :.**       

AT5G54470.1     SLAGRDQNLNQEEEIIGCNDGAESYDEESDEDEEEEEVENQVVPAAVEQELPVVSSSSSV
Sb030563_Sorbi1 PLAGASRLLLDVELATG--GGVASASSVHGTTWFSPSPSSSSSSSSSSSSTTTSSSSSPP
                .*** .: * : *   *  .*. * ..  .    . . ...  .:: ... .. ****. 

AT5G54470.1     SSGEGDQVVKRTRLDLDLNLSDEENQSRPLKRLSRDEGLSRSTVVMNSSIVKLHG-GR--
Sb030563_Sorbi1 SSSWSSSSWPRPSPAPPISSSPPPTPTAPGPR--RTQRSQREAVGPRRGPAARHGVGRAQ
                **. ...   *.     :. *   . : *  *  * :  .*.:*  . . .  ** **  

AT5G54470.1     ------------RKAEGC--------DTSSSSSFY-------------------------
Sb030563_Sorbi1 PRHRSARAWRATRKLAPCTCASQPQQSVASSAPQYTLAAAPHSSHAPPGPAPAPPLSFPP
                            **   *        ..:**:. *                         

AT5G54470.1     -------
Sb030563_Sorbi1 SPAAAED
BoxShade v3.31 C (beta, 970507) Output
AT5G54470.1     M G K K K C E L C C G V A R M Y C E S D Q A S L - - - - - - - - - - - C W D C D - G K V H G A N F L - - - - - - - - - -
Sb030563_Sorbi1    L A S S S T P V T C C L P Q V K S F R P M P A L E Q F L A G V P L P D C A D P E L K K S E G D L F L W R E E A R N R P P
 
AT5G54470.1     - - - - V A K H M R C L L C S A C Q S H T P W K A S G L N L G P T V S I C E - - - - - - - - - - - S C L A R K K N N N S
Sb030563_Sorbi1    F R E E V A S S L R P P W C A - - - D D K W W H R P G - - - - - - - - - C E V E H G M F S F A Q S A A L A - - - - - - -
 
AT5G54470.1     S L A G R D Q N L N Q E E E I I G C N D G A E S Y D E E S D E D E E E E E V E N Q V V P A A V E Q E L P V V S S S S S V
Sb030563_Sorbi1    P L A G A S R L L L D V E L A T G - - G G V A S A S S V H G T T W F S P S P S S S S S S S S S S S S T T T S S S S S P P
 
AT5G54470.1     S S G E G D Q V V K R T R L D L D L N L S D E E N Q S R P L K R L S R D E G L S R S T V V M N S S I V K L H G - G R - -
Sb030563_Sorbi1    S S S W S S S S W P R P S P A P P I S S S P P P T P T A P G P R - - R T Q R S Q R E A V G P R R G P A A R H G V G R A Q
 
AT5G54470.1     - - - - - - - - - - - - R K A E G C - - - - - - - - D T S S S S S F Y - - - - - - - - - - - - - - - - - - - - - - - - -
Sb030563_Sorbi1    P R H R S A R A W R A T R K L A P C T C A S Q P Q Q S V A S S A P Q Y T L A A A P H S S H A P P G P A P A P P L S F P P
 
AT5G54470.1     - - - - - - -
Sb030563_Sorbi1    S P A A A E D
 
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