fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G56840.1 QTRVVRLFGVHLDTT at 26/233 in AT5G56840.1
SGNSGGLDLELKLASI at 209/233 in AT5G56840.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm013342 SFVGLRLFGVQLDTT in 30/266 AT5G56840.1 1st_1st 0.450602409 Ia
QPAVLNLDLTLAAPKA in 232/266
Pt006699 LTCIFTLSLSLSLSFS in 47/383 AT5G56840.1 1st_1st 0.443373493 Ia
VAGGVRLFGVQLDIS in 110/383
NVAVPDLELSLGASKS in 354/383
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G56840.1     ------------------------------------------------------------
pt006699_POPTR_ MRFFLFRTQVGEKYPTINYVHPIIFSWCASIFVNPTLPHRHLTCIFTLSLSLSLSFSEFV
gm013342_Glyma0 ------------------------------------------------------------
                                                                            

AT5G56840.1     --------------------MGRRCSHCGNVGHNSRTCSSYQTRV---VRLFGVHLDTTS
pt006699_POPTR_ IRGCWLDVCLSKKLSSVWVKMGRKCSHCWNIGHNSRTCTTYRAAVAGGVRLFGVQLDISS
gm013342_Glyma0 --------------------MGRKCSHCGTIGHNSRTCTSLRGTSFVGLRLFGVQLD--T
                                    ***:**** .:*******:: :      :*****:**  :

AT5G56840.1     SSPPPPPPPSILAAAIKKSFSMDCLPACSSSSSSFA---------------GYLSDGLAH
pt006699_POPTR_ SS-----------AAMKKSFSVDCLPSSSSPSSSLCSSRVSIDDNSDKASVDYLSDVLLG
gm013342_Glyma0 TC-----------VTIKKSFSMDSLPSSS--SSSFSSSRITIDENSDRTSFGYLSDGLLA
                :.           .::*****:*.**:.*  ***:.               .**** *  

AT5G56840.1     KTPDRKKGVPWTAEEHRTFLIGLEKLGKGDWRGISRNFVVTKSPTQVASHAQKYFLRQTT
pt006699_POPTR_ PVQARKKGVPWTEEEHRTFLMGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRQ-A
gm013342_Glyma0 RAQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRL-A
                 .  ******** **** **:******************.*::**************  :

AT5G56840.1     TLHHKRRRTSLFDMVSAGNVEENSTTKR--------ICNDH--------IGSSSKVVWKQ
pt006699_POPTR_ IVNKKKRRPSLFDMAGSSSS-SITTSSHHVDGSRNTKQSDHPVPTYFKTSGSQYATMHHD
gm013342_Glyma0 TMDKKKRRSSLFDLVGSNKAGSNSVSAHQNDESKCEVKNN------------------ND
                 :.:*:**.****:..:..  . :.: :          .:                  ::

AT5G56840.1     GLLNPRLG------------------YPD-------------------------------
pt006699_POPTR_ TSTLPLLGISNSDHEQGVKSDVQETKYSDELAPHNHSMPFLLHRVNDPLPNPSSSSEEMP
gm013342_Glyma0 DATLSLLG--------RITYFQQETKSSD-----------YKQETFDNCSNQSQPSEEHQ
                    . **                   .*                               

AT5G56840.1     PKVSVSGSGNSGGLDLELKLASIQS---PESN---------IRP-ISVT
pt006699_POPTR_ PNVAV--------PDLELSLGASKS---LENNNPSPSL-LLIRP-IRVT
gm013342_Glyma0 P--AV--------LNLDLTLAAPKAKTLQEQNKPSPSAPFLPGPIISVT
                *  :*         :*:*.*.: ::    *.*           * * **
BoxShade v3.31 C (beta, 970507) Output
AT5G56840.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt006699_POPTR_    M R F F L F R T Q V G E K Y P T I N Y V H P I I F S W C A S I F V N P T L P H R H L T C I F T L S L S L S L S F S E F V
gm013342_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT5G56840.1     - - - - - - - - - - - - - - - - - - - - M G R R C S H C G N V G H N S R T C S S Y Q T R V - - - V R L F G V H L D T T S
pt006699_POPTR_    I R G C W L D V C L S K K L S S V W V K M G R K C S H C W N I G H N S R T C T T Y R A A V A G G V R L F G V Q L D I S S
gm013342_Glyma0    - - - - - - - - - - - - - - - - - - - - M G R K C S H C G T I G H N S R T C T S L R G T S F V G L R L F G V Q L D - - T
 
AT5G56840.1     S S P P P P P P P S I L A A A I K K S F S M D C L P A C S S S S S S F A - - - - - - - - - - - - - - - G Y L S D G L A H
pt006699_POPTR_    S S - - - - - - - - - - - A A M K K S F S V D C L P S S S S P S S S L C S S R V S I D D N S D K A S V D Y L S D V L L G
gm013342_Glyma0    T C - - - - - - - - - - - V T I K K S F S M D S L P S S S - - S S S F S S S R I T I D E N S D R T S F G Y L S D G L L A
 
AT5G56840.1     K T P D R K K G V P W T A E E H R T F L I G L E K L G K G D W R G I S R N F V V T K S P T Q V A S H A Q K Y F L R Q T T
pt006699_POPTR_    P V Q A R K K G V P W T E E E H R T F L M G L E K L G K G D W R G I S R N F V T T R T P T Q V A S H A Q K Y F L R Q - A
gm013342_Glyma0    R A Q E R K K G V P W T E E E H R I F L V G L E K L G K G D W R G I S R N F V T T R T P T Q V A S H A Q K Y F L R L - A
 
AT5G56840.1     T L H H K R R R T S L F D M V S A G N V E E N S T T K R - - - - - - - - I C N D H - - - - - - - - I G S S S K V V W K Q
pt006699_POPTR_    I V N K K K R R P S L F D M A G S S S S - S I T T S S H H V D G S R N T K Q S D H P V P T Y F K T S G S Q Y A T M H H D
gm013342_Glyma0    T M D K K K R R S S L F D L V G S N K A G S N S V S A H Q N D E S K C E V K N N - - - - - - - - - - - - - - - - - - N D
 
AT5G56840.1     G L L N P R L G - - - - - - - - - - - - - - - - - - Y P D - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt006699_POPTR_    T S T L P L L G I S N S D H E Q G V K S D V Q E T K Y S D E L A P H N H S M P F L L H R V N D P L P N P S S S S E E M P
gm013342_Glyma0    D A T L S L L G - - - - - - - - R I T Y F Q Q E T K S S D - - - - - - - - - - - Y K Q E T F D N C S N Q S Q P S E E H Q
 
AT5G56840.1     P K V S V S G S G N S G G L D L E L K L A S I Q S - - - P E S N - - - - - - - - - I R P - I S V T
pt006699_POPTR_    P N V A V - - - - - - - - P D L E L S L G A S K S - - - L E N N N P S P S L - L L I R P - I R V T
gm013342_Glyma0    P - - A V - - - - - - - - L N L D L T L A A P K A K T L Q E Q N K P S P S A P F L P G P I I S V T
 
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