fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G56840.1 QTRVVRLFGVHLDTT at 26/233 in AT5G56840.1
SGNSGGLDLELKLASI at 209/233 in AT5G56840.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt006699 LTCIFTLSLSLSLSFS in 47/383 AT5G56840.1 1st_1st 0.443373493 Ia
VAGGVRLFGVQLDIS in 110/383
NVAVPDLELSLGASKS in 354/383
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G56840.1     ------------------------------------------------------------
pt006699_POPTR_ MRFFLFRTQVGEKYPTINYVHPIIFSWCASIFVNPTLPHRHLTCIFTLSLSLSLSFSEFV
                                                                            

AT5G56840.1     --------------------MGRRCSHCGNVGHNSRTCSSYQTRV---VRLFGVHLDTTS
pt006699_POPTR_ IRGCWLDVCLSKKLSSVWVKMGRKCSHCWNIGHNSRTCTTYRAAVAGGVRLFGVQLDISS
                                    ***:**** *:*******::*:: *   ******:** :*

AT5G56840.1     SSPPPPPPPSILAAAIKKSFSMDCLPACSSSSSSFAG---------------YLSDGLAH
pt006699_POPTR_ SS-----------AAMKKSFSVDCLPSSSSPSSSLCSSRVSIDDNSDKASVDYLSDVLLG
                **           **:*****:****:.**.***:..               **** *  

AT5G56840.1     KTPDRKKGVPWTAEEHRTFLIGLEKLGKGDWRGISRNFVVTKSPTQVASHAQKYFLRQTT
pt006699_POPTR_ PVQARKKGVPWTEEEHRTFLMGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRQ-A
                 .  ******** *******:******************.*::*************** :

AT5G56840.1     TLHHKRRRTSLFDM---------VSAGNVEENSTTKRICNDH------------------
pt006699_POPTR_ IVNKKKRRPSLFDMAGSSSSSITTSSHHVDGSRNTKQ--SDHPVPTYFKTSGSQYATMHH
                 :::*:**.*****         .*: :*: . .**:  .**                  

AT5G56840.1     ---------IGSSSKVVWKQGL------------LNP----------RLGYPDPKVSVSG
pt006699_POPTR_ DTSTLPLLGISNSDH---EQGVKSDVQETKYSDELAPHNHSMPFLLHRVNDPLPNPSSSS
                         *..*.:   :**:            * *          *:. * *: * *.

AT5G56840.1     SG---NSGGLDLELKLASIQSPESN--------IRPISVT
pt006699_POPTR_ EEMPPNVAVPDLELSLGASKSLENNNPSPSLLLIRPIRVT
                .    * .  ****.*.: :* *.*        **** **
BoxShade v3.31 C (beta, 970507) Output
AT5G56840.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt006699_POPTR_    M R F F L F R T Q V G E K Y P T I N Y V H P I I F S W C A S I F V N P T L P H R H L T C I F T L S L S L S L S F S E F V
 
AT5G56840.1     - - - - - - - - - - - - - - - - - - - - M G R R C S H C G N V G H N S R T C S S Y Q T R V - - - V R L F G V H L D T T S
pt006699_POPTR_    I R G C W L D V C L S K K L S S V W V K M G R K C S H C W N I G H N S R T C T T Y R A A V A G G V R L F G V Q L D I S S
 
AT5G56840.1     S S P P P P P P P S I L A A A I K K S F S M D C L P A C S S S S S S F A G - - - - - - - - - - - - - - - Y L S D G L A H
pt006699_POPTR_    S S - - - - - - - - - - - A A M K K S F S V D C L P S S S S P S S S L C S S R V S I D D N S D K A S V D Y L S D V L L G
 
AT5G56840.1     K T P D R K K G V P W T A E E H R T F L I G L E K L G K G D W R G I S R N F V V T K S P T Q V A S H A Q K Y F L R Q T T
pt006699_POPTR_    P V Q A R K K G V P W T E E E H R T F L M G L E K L G K G D W R G I S R N F V T T R T P T Q V A S H A Q K Y F L R Q - A
 
AT5G56840.1     T L H H K R R R T S L F D M - - - - - - - - - V S A G N V E E N S T T K R I C N D H - - - - - - - - - - - - - - - - - -
pt006699_POPTR_    I V N K K K R R P S L F D M A G S S S S S I T T S S H H V D G S R N T K Q - - S D H P V P T Y F K T S G S Q Y A T M H H
 
AT5G56840.1     - - - - - - - - - I G S S S K V V W K Q G L - - - - - - - - - - - - L N P - - - - - - - - - - R L G Y P D P K V S V S G
pt006699_POPTR_    D T S T L P L L G I S N S D H - - - E Q G V K S D V Q E T K Y S D E L A P H N H S M P F L L H R V N D P L P N P S S S S
 
AT5G56840.1     S G - - - N S G G L D L E L K L A S I Q S P E S N - - - - - - - - I R P I S V T
pt006699_POPTR_    E E M P P N V A V P D L E L S L G A S K S L E N N N P S P S L L L I R P I R V T
 
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