fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G56840.1 QTRVVRLFGVHLDTT at 26/233 in AT5G56840.1
SGNSGGLDLELKLASI at 209/233 in AT5G56840.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm013342 SFVGLRLFGVQLDTT in 30/266 AT5G56840.1 1st_1st 0.450602409 Ia
QPAVLNLDLTLAAPKA in 232/266
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G56840.1     MGRRCSHCGNVGHNSRTCSSYQ-TRVV--RLFGVHLDTTSSSPPPPPPPSILAAAIKKSF
gm013342_Glyma0 MGRKCSHCGTIGHNSRTCTSLRGTSFVGLRLFGVQLDTT-------------CVTIKKSF
                ***:*****.:*******:* : * .*  *****:****             ..:*****

AT5G56840.1     SMDCLPACSSSSSSFA---------------GYLSDGLAHKTPDRKKGVPWTAEEHRTFL
gm013342_Glyma0 SMDSLP--SSSSSSFSSSRITIDENSDRTSFGYLSDGLLARAQERKKGVPWTEEEHRIFL
                ***.**  *******:               *******  :: :******** **** **

AT5G56840.1     IGLEKLGKGDWRGISRNFVVTKSPTQVASHAQKYFLRQTTTLHHKRRRTSLFDMVSAGNV
gm013342_Glyma0 VGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLR-LATMDKKKRRSSLFDLVGSNKA
                :******************.*::**************  :*:.:*:**:****:*.:.:.

AT5G56840.1     EENSTTKRICNDHIGSSSKVVWKQ-------GLLNPRLGYPDPKVSVSG---------SG
gm013342_Glyma0 GSNSVSA-----HQNDESKCEVKNNNDDATLSLLG-RITYFQQETKSSDYKQETFDNCSN
                 .**.:      * ...**   *:       .**. *: * : :.. *.         *.

AT5G56840.1     NS--------GGLDLELKLASIQ----------SPESNIRP---ISVT
gm013342_Glyma0 QSQPSEEHQPAVLNLDLTLAAPKAKTLQEQNKPSPSAPFLPGPIISVT
                :*        . *:*:*.**: :          **.: : *   ****
BoxShade v3.31 C (beta, 970507) Output
AT5G56840.1     M G R R C S H C G N V G H N S R T C S S Y Q - T R V V - - R L F G V H L D T T S S S P P P P P P P S I L A A A I K K S F
gm013342_Glyma0    M G R K C S H C G T I G H N S R T C T S L R G T S F V G L R L F G V Q L D T T - - - - - - - - - - - - - C V T I K K S F
 
AT5G56840.1     S M D C L P A C S S S S S S F A - - - - - - - - - - - - - - - G Y L S D G L A H K T P D R K K G V P W T A E E H R T F L
gm013342_Glyma0    S M D S L P - - S S S S S S F S S S R I T I D E N S D R T S F G Y L S D G L L A R A Q E R K K G V P W T E E E H R I F L
 
AT5G56840.1     I G L E K L G K G D W R G I S R N F V V T K S P T Q V A S H A Q K Y F L R Q T T T L H H K R R R T S L F D M V S A G N V
gm013342_Glyma0    V G L E K L G K G D W R G I S R N F V T T R T P T Q V A S H A Q K Y F L R - L A T M D K K K R R S S L F D L V G S N K A
 
AT5G56840.1     E E N S T T K R I C N D H I G S S S K V V W K Q - - - - - - - G L L N P R L G Y P D P K V S V S G - - - - - - - - - S G
gm013342_Glyma0    G S N S V S A - - - - - H Q N D E S K C E V K N N N D D A T L S L L G - R I T Y F Q Q E T K S S D Y K Q E T F D N C S N
 
AT5G56840.1     N S - - - - - - - - G G L D L E L K L A S I Q - - - - - - - - - - S P E S N I R P - - - I S V T
gm013342_Glyma0    Q S Q P S E E H Q P A V L N L D L T L A A P K A K T L Q E Q N K P S P S A P F L P G P I I S V T
 
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