fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G56840.1 QTRVVRLFGVHLDTT at 26/233 in AT5G56840.1
SGNSGGLDLELKLASI at 209/233 in AT5G56840.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm013342 SFVGLRLFGVQLDTT in 30/266 AT5G56840.1 1st_1st 0.450602409 Ia
QPAVLNLDLTLAAPKA in 232/266
Gm020044 SFVGLRLFGVQLDST in 32/267 AT5G56840.1 not_1st 0.448192771 II
QVAVLNLDLTLAAPKA in 234/267
Gm000157 NFVGVRLFGVQLADI in 30/278 AT5G56840.1 not_1st 0.426506024 II
AAVVPDLELTLAVSKG in 240/278
Gm013343 SFVGLRLFGVQLDTT in 30/261 AT5G56840.1 not_1st 0.404819277 II
QPAVLNLDLTLAAPKA in 227/261
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G56840.1     MGRRCSHCGNVGHNSRTCSSYQ---TRVV--RLFGVHL-----DTTSSSPPPPPPPSILA
gm013342_Glyma0 MGRKCSHCGTIGHNSRTCTSLRG--TSFVGLRLFGVQL-----DTT-------------C
gm000157_Glyma0 MGRKCSHCGNIGHNSRTCASFRA--TNFVGVRLFGVQLADISSTSSN------------S
gm013343_Glyma0 MGRKCSHCGTIGHNSRTCTSLRG--TSFVGLRLFGVQL-----DTT-------------C
gm020044_Glyma0 MGRKCSHCGTIGHNSRTCTSLRGATTSFVGLRLFGVQL-----DSTN------------C
                ***:*****.:*******:* :   * .*  *****:*      ::             .

AT5G56840.1     AAIKKSFSMDCLPACSSSSSSFA---------------GYL--SDGLAHKTPD-RKKGVP
gm013342_Glyma0 VTIKKSFSMDSLPSSS--SSSFSSSRITIDENSDRTSFGYL--SDGLLARAQE-RKKGVP
gm000157_Glyma0 LSMKKSFSMDSFPSSSSPSSSFSSS---------RTSIGYLSDSDGLIVGAQEIRKKGVP
gm013343_Glyma0 VTIKKSFSMDSLPSSS--SSSFSSSRITIDENSDRTSFGYL--SDGLLARAQE-RKK---
gm020044_Glyma0 VSIKKSFSMDSLPSSS--SSSFSSSRLTIDENSDRTSFGYL--SDGLLARAQE-RKKGVP
                 ::*******.:*:.*  ****:               ***  ****   : : ***   

AT5G56840.1     WTAEEHRTFLIGLEKLGKGDWRGISRNFVVTKSPTQVASHAQKYFLRQTTTLHHKRRRTS
gm013342_Glyma0 WTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLR-LATMDKKKRRSS
gm000157_Glyma0 WTEEEHRTFLVGLEKLGKGDWRGISRNYVTSRTPTQVASHAQKYFIR-LATMNKKKRRSS
gm013343_Glyma0 --EEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLR-LATMDKKKRRSS
gm020044_Glyma0 WTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLR-LATIDKKKRRSS
                   **** **:****************:*.:::************:*  :*:.:*:**:*

AT5G56840.1     LFDMVSAGNVEENSTTKRICNDHIGSSSKVVWK---QGLLNPRLG-----YPDPKVSV--
gm013342_Glyma0 LFDLVGSNKAGSNSVSAHQND-----ESKCEVKNNNDDATLSLLGRITYFQQETKSSDYK
gm000157_Glyma0 LFDMVGNGI--TNPISSSNCK-----SSKCEIE---DDVTLSLVQ-----LQDTKLDE--
gm013343_Glyma0 LFDLVGSNKAGSNSVSAHQND-----ESKCEVKNNNDDATLSLLGRITYFQQETKSSDYK
gm020044_Glyma0 LFDLVGSNKAGSNSVSAHQKD-----ESKCEVK-NNDAATLSLLGRITYFQQENKSSEYK
                ***:*. .    *. :    .     .**   :   :    . :        : * .   

AT5G56840.1     -----------------------------SGSGNSGGL--DLELKLASI-----------
gm013342_Glyma0 QETFDNCSNQSQPSEEHQPAVL------------------NLDLTLAAP--KAKTL----
gm000157_Glyma0 QKDSDKYCEAGPAGAEHEAVPLWLHLQMKSSNNNVAAVVPDLELTLAVSKGKAKTLLGLE
gm013343_Glyma0 QETFDNCSNQSQPSEEHQPAVL------------------NLDLTLAAP--KAKTL----
gm020044_Glyma0 QETFDNCSYQSQPGEEHQVAVL------------------NLDLTLAAP--KAKTL----
                                                        :*:*.**             

AT5G56840.1     Q-----SPES--NIRP-ISVT
gm013342_Glyma0 QEQNKPSPSAPFLPGPIISVT
gm000157_Glyma0 QTQTKSSPDS-FLLGP-ISVT
gm013343_Glyma0 QEQNKPSPSAPFLPGPIISVT
gm020044_Glyma0 QEQNKSSPSAPFLLGP-ISVT
                *     **.:     * ****
BoxShade v3.31 C (beta, 970507) Output
AT5G56840.1     M G R R C S H C G N V G H N S R T C S S Y Q - - - T R V V - - R L F G V H L - - - - - D T T S S S P P P P P P P S I L A
gm013342_Glyma0    M G R K C S H C G T I G H N S R T C T S L R G - - T S F V G L R L F G V Q L - - - - - D T T - - - - - - - - - - - - - C
gm000157_Glyma0    M G R K C S H C G N I G H N S R T C A S F R A - - T N F V G V R L F G V Q L A D I S S T S S N - - - - - - - - - - - - S
gm013343_Glyma0    M G R K C S H C G T I G H N S R T C T S L R G - - T S F V G L R L F G V Q L - - - - - D T T - - - - - - - - - - - - - C
gm020044_Glyma0    M G R K C S H C G T I G H N S R T C T S L R G A T T S F V G L R L F G V Q L - - - - - D S T N - - - - - - - - - - - - C
 
AT5G56840.1     A A I K K S F S M D C L P A C S S S S S S F A - - - - - - - - - - - - - - - G Y L - - S D G L A H K T P D - R K K G V P
gm013342_Glyma0    V T I K K S F S M D S L P S S S - - S S S F S S S R I T I D E N S D R T S F G Y L - - S D G L L A R A Q E - R K K G V P
gm000157_Glyma0    L S M K K S F S M D S F P S S S S P S S S F S S S - - - - - - - - - R T S I G Y L S D S D G L I V G A Q E I R K K G V P
gm013343_Glyma0    V T I K K S F S M D S L P S S S - - S S S F S S S R I T I D E N S D R T S F G Y L - - S D G L L A R A Q E - R K K - - -
gm020044_Glyma0    V S I K K S F S M D S L P S S S - - S S S F S S S R L T I D E N S D R T S F G Y L - - S D G L L A R A Q E - R K K G V P
 
AT5G56840.1     W T A E E H R T F L I G L E K L G K G D W R G I S R N F V V T K S P T Q V A S H A Q K Y F L R Q T T T L H H K R R R T S
gm013342_Glyma0    W T E E E H R I F L V G L E K L G K G D W R G I S R N F V T T R T P T Q V A S H A Q K Y F L R - L A T M D K K K R R S S
gm000157_Glyma0    W T E E E H R T F L V G L E K L G K G D W R G I S R N Y V T S R T P T Q V A S H A Q K Y F I R - L A T M N K K K R R S S
gm013343_Glyma0    - - E E E H R I F L V G L E K L G K G D W R G I S R N F V T T R T P T Q V A S H A Q K Y F L R - L A T M D K K K R R S S
gm020044_Glyma0    W T E E E H R I F L V G L E K L G K G D W R G I S R N F V T T R T P T Q V A S H A Q K Y F L R - L A T I D K K K R R S S
 
AT5G56840.1     L F D M V S A G N V E E N S T T K R I C N D H I G S S S K V V W K - - - Q G L L N P R L G - - - - - Y P D P K V S V - -
gm013342_Glyma0    L F D L V G S N K A G S N S V S A H Q N D - - - - - E S K C E V K N N N D D A T L S L L G R I T Y F Q Q E T K S S D Y K
gm000157_Glyma0    L F D M V G N G I - - T N P I S S S N C K - - - - - S S K C E I E - - - D D V T L S L V Q - - - - - L Q D T K L D E - -
gm013343_Glyma0    L F D L V G S N K A G S N S V S A H Q N D - - - - - E S K C E V K N N N D D A T L S L L G R I T Y F Q Q E T K S S D Y K
gm020044_Glyma0    L F D L V G S N K A G S N S V S A H Q K D - - - - - E S K C E V K - N N D A A T L S L L G R I T Y F Q Q E N K S S E Y K
 
AT5G56840.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - S G S G N S G G L - - D L E L K L A S I - - - - - - - - - - -
gm013342_Glyma0    Q E T F D N C S N Q S Q P S E E H Q P A V L - - - - - - - - - - - - - - - - - - N L D L T L A A P - - K A K T L - - - -
gm000157_Glyma0    Q K D S D K Y C E A G P A G A E H E A V P L W L H L Q M K S S N N N V A A V V P D L E L T L A V S K G K A K T L L G L E
gm013343_Glyma0    Q E T F D N C S N Q S Q P S E E H Q P A V L - - - - - - - - - - - - - - - - - - N L D L T L A A P - - K A K T L - - - -
gm020044_Glyma0    Q E T F D N C S Y Q S Q P G E E H Q V A V L - - - - - - - - - - - - - - - - - - N L D L T L A A P - - K A K T L - - - -
 
AT5G56840.1     Q - - - - - S P E S - - N I R P - I S V T
gm013342_Glyma0    Q E Q N K P S P S A P F L P G P I I S V T
gm000157_Glyma0    Q T Q T K S S P D S - F L L G P - I S V T
gm013343_Glyma0    Q E Q N K P S P S A P F L P G P I I S V T
gm020044_Glyma0    Q E Q N K S S P S A P F L L G P - I S V T
 
0