fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57420.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt009547 SDSVSDLDLDLSNAIP in 116/175 AT5G57420.1 not_1st 0.494623655 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G57420.1     MN-SFEPQS-QDSLQRRFHQ-----DNSTTQQPRDTTTPFIPKPASKNHNNSNSSSGAAG
pt009547_POPTR_ MNSSFDSKKREDSLKGRWQEIRRVPNMSQYTRPTSSVPNFMAKPI---------------
                ** **:.:. :***: *:::     : *   :* .:.. *:.**                

AT5G57420.1     RSFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDGADS
pt009547_POPTR_ -TFPGFE---DDDVVSTMIPPVTVALEGRSICQRISLHKHESYHSLAKALRQMFVDGAGS
                 :* **    :**:**:::*****.************.** **:***.**********.*

AT5G57420.1     TD--------------DLDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILP
pt009547_POPTR_ DSGQNTSSASDSVSDLDLDLSNAIPGHLIAYEDIENDLLLAGDLNWQDFVRVAKRIRILP
                 .              *****************:**********.*:*************

AT5G57420.1     VKGNTRQVKRNE--
pt009547_POPTR_ AKGNSRKATGGTAV
                .***:*:.. .
BoxShade v3.31 C (beta, 970507) Output
AT5G57420.1     M N - S F E P Q S - Q D S L Q R R F H Q - - - - - D N S T T Q Q P R D T T T P F I P K P A S K N H N N S N S S S G A A G
pt009547_POPTR_    M N S S F D S K K R E D S L K G R W Q E I R R V P N M S Q Y T R P T S S V P N F M A K P I - - - - - - - - - - - - - - -
 
AT5G57420.1     R S F Q G F G L N V E D D L V S S V V P P V T V V L E G R S I C Q R I S L D K H G S Y Q S L A S A L R Q M F V D G A D S
pt009547_POPTR_    - T F P G F E - - - D D D V V S T M I P P V T V A L E G R S I C Q R I S L H K H E S Y H S L A K A L R Q M F V D G A G S
 
AT5G57420.1     T D - - - - - - - - - - - - - - D L D L S N A I P G H L I A Y E D M E N D L L L A G D L T W K D F V R V A K R I R I L P
pt009547_POPTR_    D S G Q N T S S A S D S V S D L D L D L S N A I P G H L I A Y E D I E N D L L L A G D L N W Q D F V R V A K R I R I L P
 
AT5G57420.1     V K G N T R Q V K R N E - -
pt009547_POPTR_    A K G N S R K A T G G T A V
 
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