fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57420.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os019287 not found in 169aa AT5G57420.1 1st_1st 0.419354838 Ia
Pt006786 not found in 173aa AT5G57420.1 1st_1st 0.494623655 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G57420.1     ---MNSFEPQS-QDSLQRRFHQDNST---TQQPRDTTT-P-FIPKPASKNHNNSNSSSGA
Os019287_Os04t0 MISGAGGEQQQ-QQDTKRRL------------PAPTTS----------EQERRQKQHRG-
pt006786_POPTR_ ---MNGFESQQRQEPLKRRWQEITSVPNMSQFPRPTSSLPNFMTKPI-------------
                     . * *. *:  :**             *  *::                      

AT5G57420.1     AGRSFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDGA
Os019287_Os04t0 ---KMLRLSVQQGDDVTAGVVPPVTVVLDGRSICHRVHLSKHTGYRSLAAALRRMFVDAD
pt006786_POPTR_ ---TFPGFE---DDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGG
                   .:  :     **:.: ::*******:*****:*: * ** .*:*** ***:****. 

AT5G57420.1     D--------------STDD---LDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKR
Os019287_Os04t0 DDVGAADEAAGRSSCSDADRGGLDLSNAVPGHVVAYEDIENDLLLAGDLNWKDFVRVARR
pt006786_POPTR_ SDSGGSTASSASESVSDHD---LDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKR
                .              *  *   ***:**:***::****:*.********.********:*

AT5G57420.1     IRILPVKGNTRQVKRNE---
Os019287_Os04t0 IRIIPAKPSSR--MRPQS--
pt006786_POPTR_ IRILPAKGNSR--KRTGGAA
                ***:*.* .:*   *
BoxShade v3.31 C (beta, 970507) Output
AT5G57420.1     - - - M N S F E P Q S - Q D S L Q R R F H Q D N S T - - - T Q Q P R D T T T - P - F I P K P A S K N H N N S N S S S G A
Os019287_Os04t0    M I S G A G G E Q Q Q - Q Q D T K R R L - - - - - - - - - - - - P A P T T S - - - - - - - - - - E Q E R R Q K Q H R G -
pt006786_POPTR_    - - - M N G F E S Q Q R Q E P L K R R W Q E I T S V P N M S Q F P R P T S S L P N F M T K P I - - - - - - - - - - - - -
 
AT5G57420.1     A G R S F Q G F G L N V E D D L V S S V V P P V T V V L E G R S I C Q R I S L D K H G S Y Q S L A S A L R Q M F V D G A
Os019287_Os04t0    - - - K M L R L S V Q Q G D D V T A G V V P P V T V V L D G R S I C H R V H L S K H T G Y R S L A A A L R R M F V D A D
pt006786_POPTR_    - - - T F P G F E - - - D D D L V S T M I P P V T V V L E G R S I C Q R I S L H K H A S Y H S L A K A L R Q M F V D G G
 
AT5G57420.1     D - - - - - - - - - - - - - - S T D D - - - L D L S N A I P G H L I A Y E D M E N D L L L A G D L T W K D F V R V A K R
Os019287_Os04t0    D D V G A A D E A A G R S S C S D A D R G G L D L S N A V P G H V V A Y E D I E N D L L L A G D L N W K D F V R V A R R
pt006786_POPTR_    S D S G G S T A S S A S E S V S D H D - - - L D L T N A V P G H L I A Y E D I E S D L L L A G D L N W K D F V R V A K R
 
AT5G57420.1     I R I L P V K G N T R Q V K R N E - - -
Os019287_Os04t0    I R I I P A K P S S R - - M R P Q S - -
pt006786_POPTR_    I R I L P A K G N S R - - K R T G G A A
 
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