fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57420.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os019287 not found in 169aa AT5G57420.1 1st_1st 0.419354838 Ia
Pt006786 not found in 173aa AT5G57420.1 1st_1st 0.494623655 Ia
Pt009547 SDSVSDLDLDLSNAIP in 116/175 AT5G57420.1 not_1st 0.494623655 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G57420.1     -MN-SFEPQS-QDSLQRRFHQDNST---TQQPRDTTT-P-FIPKPASKNHNNSNSSSGAA
pt009547_POPTR_ -MNSSFDSKKREDSLKGRWQEIRRVPNMSQYTRPTSSVPNFMAKPI--------------
Os019287_Os04t0 MISGAGGEQQQQQDTKRRL------------PAPTTS----------EQERRQKQHRG--
pt006786_POPTR_ -MN-GFESQQRQEPLKRRWQEITSVPNMSQFPRPTSSLPNFMTKPI--------------
                 :. .   :. ::  : *             .  *::                       

AT5G57420.1     GRSFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDG--
pt009547_POPTR_ --TFPGFE---DDDVVSTMIPPVTVALEGRSICQRISLHKHESYHSLAKALRQMFVDGAG
Os019287_Os04t0 --KMLRLSVQQGDDVTAGVVPPVTVVLDGRSICHRVHLSKHTGYRSLAAALRRMFVDA-D
pt006786_POPTR_ --TFPGFE---DDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDG-G
                  .:  :     **:.: ::*****.*:*****:*: * ** .*:*** ***:****.  

AT5G57420.1     --------ADSTD-----D---LDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKR
pt009547_POPTR_ SDSGQNT-SSASDSVSDLD---LDLSNAIPGHLIAYEDIENDLLLAGDLNWQDFVRVAKR
Os019287_Os04t0 DDVGAADEAAGRSSCSDADRGGLDLSNAVPGHVVAYEDIENDLLLAGDLNWKDFVRVARR
pt006786_POPTR_ SDSGGSTASSASESVSDHD---LDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKR
                        : . .     *   ***:**:***::****:*.********.*:******:*

AT5G57420.1     IRILPVKGNTRQVKRNE--
pt009547_POPTR_ IRILPAKGNSRKATGGTAV
Os019287_Os04t0 IRIIPAKPSSRMRPQS---
pt006786_POPTR_ IRILPAKGNSRKRTGGAA-
                ***:*.* .:*    .
BoxShade v3.31 C (beta, 970507) Output
AT5G57420.1     - M N - S F E P Q S - Q D S L Q R R F H Q D N S T - - - T Q Q P R D T T T - P - F I P K P A S K N H N N S N S S S G A A
pt009547_POPTR_    - M N S S F D S K K R E D S L K G R W Q E I R R V P N M S Q Y T R P T S S V P N F M A K P I - - - - - - - - - - - - - -
Os019287_Os04t0    M I S G A G G E Q Q Q Q Q D T K R R L - - - - - - - - - - - - P A P T T S - - - - - - - - - - E Q E R R Q K Q H R G - -
pt006786_POPTR_    - M N - G F E S Q Q R Q E P L K R R W Q E I T S V P N M S Q F P R P T S S L P N F M T K P I - - - - - - - - - - - - - -
 
AT5G57420.1     G R S F Q G F G L N V E D D L V S S V V P P V T V V L E G R S I C Q R I S L D K H G S Y Q S L A S A L R Q M F V D G - -
pt009547_POPTR_    - - T F P G F E - - - D D D V V S T M I P P V T V A L E G R S I C Q R I S L H K H E S Y H S L A K A L R Q M F V D G A G
Os019287_Os04t0    - - K M L R L S V Q Q G D D V T A G V V P P V T V V L D G R S I C H R V H L S K H T G Y R S L A A A L R R M F V D A - D
pt006786_POPTR_    - - T F P G F E - - - D D D L V S T M I P P V T V V L E G R S I C Q R I S L H K H A S Y H S L A K A L R Q M F V D G - G
 
AT5G57420.1     - - - - - - - - A D S T D - - - - - D - - - L D L S N A I P G H L I A Y E D M E N D L L L A G D L T W K D F V R V A K R
pt009547_POPTR_    S D S G Q N T - S S A S D S V S D L D - - - L D L S N A I P G H L I A Y E D I E N D L L L A G D L N W Q D F V R V A K R
Os019287_Os04t0    D D V G A A D E A A G R S S C S D A D R G G L D L S N A V P G H V V A Y E D I E N D L L L A G D L N W K D F V R V A R R
pt006786_POPTR_    S D S G G S T A S S A S E S V S D H D - - - L D L T N A V P G H L I A Y E D I E S D L L L A G D L N W K D F V R V A K R
 
AT5G57420.1     I R I L P V K G N T R Q V K R N E - -
pt009547_POPTR_    I R I L P A K G N S R K A T G G T A V
Os019287_Os04t0    I R I I P A K P S S R M R P Q S - - -
pt006786_POPTR_    I R I L P A K G N S R K R T G G A A -
 
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