fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57420.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt006786 not found in 173aa AT5G57420.1 1st_1st 0.494623655 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G57420.1     MNSFEPQS-QDSLQRRFHQDNST---TQQPRDTTT-P-FIPKPASKNHNNSNSSSGAAGR
pt006786_POPTR_ MNGFESQQRQEPLKRRWQEITSVPNMSQFPRPTSSLPNFMTKPI----------------
                **.**.*. *:.*:**::: .*.   :* ** *:: * *:.**                 

AT5G57420.1     SFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDGAD--
pt006786_POPTR_ TFPGFE---DDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGGSDS
                :* **    :*****:::******************.**.**:***.*********..  

AT5G57420.1     ------------STDDLDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPV
pt006786_POPTR_ GGSTASSASESVSDHDLDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKRIRILPA
                            * .****:**:*********:*.********.***************.

AT5G57420.1     KGNTRQVKRNE---
pt006786_POPTR_ KGNSR--KRTGGAA
                ***:*  **.
BoxShade v3.31 C (beta, 970507) Output
AT5G57420.1     M N S F E P Q S - Q D S L Q R R F H Q D N S T - - - T Q Q P R D T T T - P - F I P K P A S K N H N N S N S S S G A A G R
pt006786_POPTR_    M N G F E S Q Q R Q E P L K R R W Q E I T S V P N M S Q F P R P T S S L P N F M T K P I - - - - - - - - - - - - - - - -
 
AT5G57420.1     S F Q G F G L N V E D D L V S S V V P P V T V V L E G R S I C Q R I S L D K H G S Y Q S L A S A L R Q M F V D G A D - -
pt006786_POPTR_    T F P G F E - - - D D D L V S T M I P P V T V V L E G R S I C Q R I S L H K H A S Y H S L A K A L R Q M F V D G G S D S
 
AT5G57420.1     - - - - - - - - - - - - S T D D L D L S N A I P G H L I A Y E D M E N D L L L A G D L T W K D F V R V A K R I R I L P V
pt006786_POPTR_    G G S T A S S A S E S V S D H D L D L T N A V P G H L I A Y E D I E S D L L L A G D L N W K D F V R V A K R I R I L P A
 
AT5G57420.1     K G N T R Q V K R N E - - -
pt006786_POPTR_    K G N S R - - K R T G G A A
 
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