fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57420.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt006786 not found in 173aa AT5G57420.1 1st_1st 0.494623655 Ia
Pt009547 SDSVSDLDLDLSNAIP in 116/175 AT5G57420.1 not_1st 0.494623655 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G57420.1     MN-SFEPQS-QDSLQRRFHQDNST---TQQPRDTTT-P-FIPKPASKNHNNSNSSSGAAG
pt006786_POPTR_ MN-GFESQQRQEPLKRRWQEITSVPNMSQFPRPTSSLPNFMTKPI---------------
pt009547_POPTR_ MNSSFDSKKREDSLKGRWQEIRRVPNMSQYTRPTSSVPNFMAKPI---------------
                ** .*:.:. ::.*: *:::   .   :* .* *:: * *:.**                

AT5G57420.1     RSFQGFGLNVEDDLVSSVVPPVTVVLEGRSICQRISLDKHGSYQSLASALRQMFVDG---
pt006786_POPTR_ -TFPGFE---DDDLVSTMIPPVTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDG-GS
pt009547_POPTR_ -TFPGFE---DDDVVSTMIPPVTVALEGRSICQRISLHKHESYHSLAKALRQMFVDGAGS
                 :* **    :**:**:::*****.************.** **:***.*********   

AT5G57420.1     -------ADSTD-----DLDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRIL
pt006786_POPTR_ DSGGSTASSASESVSDHDLDLTNAVPGHLIAYEDIESDLLLAGDLNWKDFVRVAKRIRIL
pt009547_POPTR_ DSGQNT-SSASDSVSDLDLDLSNAIPGHLIAYEDIENDLLLAGDLNWQDFVRVAKRIRIL
                       :.:::     ****:**:*********:*.********.*:************

AT5G57420.1     PVKGNTRQVKRNE--
pt006786_POPTR_ PAKGNSRKRTGGAA-
pt009547_POPTR_ PAKGNSRKATGGTAV
                *.***:*: . .
BoxShade v3.31 C (beta, 970507) Output
AT5G57420.1     M N - S F E P Q S - Q D S L Q R R F H Q D N S T - - - T Q Q P R D T T T - P - F I P K P A S K N H N N S N S S S G A A G
pt006786_POPTR_    M N - G F E S Q Q R Q E P L K R R W Q E I T S V P N M S Q F P R P T S S L P N F M T K P I - - - - - - - - - - - - - - -
pt009547_POPTR_    M N S S F D S K K R E D S L K G R W Q E I R R V P N M S Q Y T R P T S S V P N F M A K P I - - - - - - - - - - - - - - -
 
AT5G57420.1     R S F Q G F G L N V E D D L V S S V V P P V T V V L E G R S I C Q R I S L D K H G S Y Q S L A S A L R Q M F V D G - - -
pt006786_POPTR_    - T F P G F E - - - D D D L V S T M I P P V T V V L E G R S I C Q R I S L H K H A S Y H S L A K A L R Q M F V D G - G S
pt009547_POPTR_    - T F P G F E - - - D D D V V S T M I P P V T V A L E G R S I C Q R I S L H K H E S Y H S L A K A L R Q M F V D G A G S
 
AT5G57420.1     - - - - - - - A D S T D - - - - - D L D L S N A I P G H L I A Y E D M E N D L L L A G D L T W K D F V R V A K R I R I L
pt006786_POPTR_    D S G G S T A S S A S E S V S D H D L D L T N A V P G H L I A Y E D I E S D L L L A G D L N W K D F V R V A K R I R I L
pt009547_POPTR_    D S G Q N T - S S A S D S V S D L D L D L S N A I P G H L I A Y E D I E N D L L L A G D L N W Q D F V R V A K R I R I L
 
AT5G57420.1     P V K G N T R Q V K R N E - -
pt006786_POPTR_    P A K G N S R K R T G G A A -
pt009547_POPTR_    P A K G N S R K A T G G T A V
 
0