fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57520.1 YQPNTSLRLSLPSYKN at 7/150 in AT5G57520.1
HQLNLELVLEPS at 19/150 in AT5G57520.1
DQEKSHLDLSLRL at 142/150 in AT5G57520.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt009061 FQPNTSLHLSLPSNQL in 8/126 AT5G57520.1 1st_1st 0.438848920 Ia
QEELSQLDLSLRL in 119/126
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G57520.1     MDYQPNTSLRLSLPSYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQRK
pt009061_POPTR_ MDFQPNTSLHLSLPS---NQLNLELVLEPSSSSSSSPHSP------AEPRIFSCNYCRRK
                **:******:*****   :************ ****. *.       :**:******:**

AT5G57520.1     FYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQPYPFSGRFELYGRGYQGFLESG
pt009061_POPTR_ FYSSQALGGHQNAHKLERTLAKKSREMSSSVRAHGRSNP-----RFE-----HHGHAGVG
                **************************:  * .: . .:*     ***     ::*.   *

AT5G57520.1     GSRDFSARRVPESGLDQDQEKSHLDLSLRL
pt009061_POPTR_ GSWSLVYRTE-----NVQEELSQLDLSLRL
                ** .:  *       : ::* *:*******
BoxShade v3.31 C (beta, 970507) Output
AT5G57520.1     M D Y Q P N T S L R L S L P S Y K N H Q L N L E L V L E P S S M S S S S S S S T N S S S C L E Q P R V F S C N Y C Q R K
pt009061_POPTR_    M D F Q P N T S L H L S L P S - - - N Q L N L E L V L E P S S S S S S S P H S P - - - - - - A E P R I F S C N Y C R R K
 
AT5G57520.1     F Y S S Q A L G G H Q N A H K L E R T L A K K S R E L F R S S N T V D S D Q P Y P F S G R F E L Y G R G Y Q G F L E S G
pt009061_POPTR_    F Y S S Q A L G G H Q N A H K L E R T L A K K S R E M S S S V R A H G R S N P - - - - - R F E - - - - - H H G H A G V G
 
AT5G57520.1     G S R D F S A R R V P E S G L D Q D Q E K S H L D L S L R L
pt009061_POPTR_    G S W S L V Y R T E - - - - - N V Q E E L S Q L D L S L R L
 
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