fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57520.1 YQPNTSLRLSLPSYKN at 7/150 in AT5G57520.1
HQLNLELVLEPS at 19/150 in AT5G57520.1
DQEKSHLDLSLRL at 142/150 in AT5G57520.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm046246 HDDENHLNLDLLLEPS in 20/136 AT5G57520.1 1st_1st 0.388489208 Ib
Pt009061 FQPNTSLHLSLPSNQL in 8/126 AT5G57520.1 1st_1st 0.438848920 Ia
QEELSQLDLSLRL in 119/126
Pt006308 FQPNTSLHLSLPSNQL in 8/169 AT5G57520.1 not_1st 0.420863309 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G57520.1     MDYQ-PNTSLRLSLPSYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQR
gm046246_Glyma1 MNFHNPNTSLHLSQHD-DENHLNLDLLLEPSSSSSSSPSPI----CSMEPRIFSCNYCQR
pt009061_POPTR_ MDFQ-PNTSLHLSLPS---NQLNLELVLEPSSSSSSSPHSP------AEPRIFSCNYCRR
pt006308_POPTR_ MDFQ-PNTSLHLSLPS---NQLNLELVLEPSSSSSR--HSP------AEPRIFSCNYCQR
                *::: *****:**  .   ::***:*:***** **    .        :**:******:*

AT5G57520.1     KFYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQP-------YPFSGR-------
gm046246_Glyma1 KFYSSQALGGHQNAHKLERTLAKKSRELSLNMQSYGAAEQRSNFGASHHLGHR-------
pt009061_POPTR_ KFYSSQALGGHQNAHKLERTLAKKSREMSSSVRAHGRSNPR-------------------
pt006308_POPTR_ KFYSSQALGGHQNAHKLERTLAKKSREMSSSVRAHGGSNPRSE--SSYSMSGSTYPRDHQ
                ***************************:  . .: .  :                     

AT5G57520.1     -----FELYGRGYQGFLESGGSRDFSARRVPES-GLDQDQ----EKSHLDLSLRL-----
gm046246_Glyma1 -ALGVVDNQGQSY---VRLGGRKEFSY-------GSKEG---------------------
pt009061_POPTR_ -----FEHHGHAG-----VGGSWSLVY-RTE---NVQEEL------SQLDLSLRL-----
pt006308_POPTR_ PALAGFEHHGHAGR---IVGG---LSYGRTEMNYGSREETASMFQKSKLDFEILSKTRSR
                     .:  *:.       **   :         .  :                      

AT5G57520.1     ---------
gm046246_Glyma1 ---------
pt009061_POPTR_ ---------
pt006308_POPTR_ ASPTSSWGK
BoxShade v3.31 C (beta, 970507) Output
AT5G57520.1     M D Y Q - P N T S L R L S L P S Y K N H Q L N L E L V L E P S S M S S S S S S S T N S S S C L E Q P R V F S C N Y C Q R
gm046246_Glyma1    M N F H N P N T S L H L S Q H D - D E N H L N L D L L L E P S S S S S S S P S P I - - - - C S M E P R I F S C N Y C Q R
pt009061_POPTR_    M D F Q - P N T S L H L S L P S - - - N Q L N L E L V L E P S S S S S S S P H S P - - - - - - A E P R I F S C N Y C R R
pt006308_POPTR_    M D F Q - P N T S L H L S L P S - - - N Q L N L E L V L E P S S S S S R - - H S P - - - - - - A E P R I F S C N Y C Q R
 
AT5G57520.1     K F Y S S Q A L G G H Q N A H K L E R T L A K K S R E L F R S S N T V D S D Q P - - - - - - - Y P F S G R - - - - - - -
gm046246_Glyma1    K F Y S S Q A L G G H Q N A H K L E R T L A K K S R E L S L N M Q S Y G A A E Q R S N F G A S H H L G H R - - - - - - -
pt009061_POPTR_    K F Y S S Q A L G G H Q N A H K L E R T L A K K S R E M S S S V R A H G R S N P R - - - - - - - - - - - - - - - - - - -
pt006308_POPTR_    K F Y S S Q A L G G H Q N A H K L E R T L A K K S R E M S S S V R A H G G S N P R S E - - S S Y S M S G S T Y P R D H Q
 
AT5G57520.1     - - - - - F E L Y G R G Y Q G F L E S G G S R D F S A R R V P E S - G L D Q D Q - - - - E K S H L D L S L R L - - - - -
gm046246_Glyma1    - A L G V V D N Q G Q S Y - - - V R L G G R K E F S Y - - - - - - - G S K E G - - - - - - - - - - - - - - - - - - - - -
pt009061_POPTR_    - - - - - F E H H G H A G - - - - - V G G S W S L V Y - R T E - - - N V Q E E L - - - - - - S Q L D L S L R L - - - - -
pt006308_POPTR_    P A L A G F E H H G H A G R - - - I V G G - - - L S Y G R T E M N Y G S R E E T A S M F Q K S K L D F E I L S K T R S R
 
AT5G57520.1     - - - - - - - - -
gm046246_Glyma1    - - - - - - - - -
pt009061_POPTR_    - - - - - - - - -
pt006308_POPTR_    A S P T S S W G K
 
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