fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57520.1 YQPNTSLRLSLPSYKN at 7/150 in AT5G57520.1
HQLNLELVLEPS at 19/150 in AT5G57520.1
DQEKSHLDLSLRL at 142/150 in AT5G57520.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt006308 FQPNTSLHLSLPSNQL in 8/169 AT5G57520.1 not_1st 0.420863309 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G57520.1     MDYQPNTSLRLSLPSYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQRK
pt006308_POPTR_ MDFQPNTSLHLSLPS---NQLNLELVLEPSSSSSRHSPA--------EPRIFSCNYCQRK
                **:******:*****   :************ **  *.:        :**:*********

AT5G57520.1     FYSSQALGGHQNAHKLERTLAKKSRELFRS------SNTVDSDQPYPFSGRFELYGRGYQ
pt006308_POPTR_ FYSSQALGGHQNAHKLERTLAKKSREMSSSVRAHGGSNP-RSESSYSMSG--STYPRDHQ
                **************************:  *      **.  *:..*.:**  . * *.:*

AT5G57520.1     ----GFLESG------------------GSRDFSARRVPESGLDQD---QEKSHLDLSLR
pt006308_POPTR_ PALAGFEHHGHAGRIVGGLSYGRTEMNYGSREETASMFQKSKLDFEILSKTRSRASPTSS
                    ** . *                  ***: :*  . :* ** :   : :*: . :  

AT5G57520.1     L--
pt006308_POPTR_ WGK
BoxShade v3.31 C (beta, 970507) Output
AT5G57520.1     M D Y Q P N T S L R L S L P S Y K N H Q L N L E L V L E P S S M S S S S S S S T N S S S C L E Q P R V F S C N Y C Q R K
pt006308_POPTR_    M D F Q P N T S L H L S L P S - - - N Q L N L E L V L E P S S S S S R H S P A - - - - - - - - E P R I F S C N Y C Q R K
 
AT5G57520.1     F Y S S Q A L G G H Q N A H K L E R T L A K K S R E L F R S - - - - - - S N T V D S D Q P Y P F S G R F E L Y G R G Y Q
pt006308_POPTR_    F Y S S Q A L G G H Q N A H K L E R T L A K K S R E M S S S V R A H G G S N P - R S E S S Y S M S G - - S T Y P R D H Q
 
AT5G57520.1     - - - - G F L E S G - - - - - - - - - - - - - - - - - - G S R D F S A R R V P E S G L D Q D - - - Q E K S H L D L S L R
pt006308_POPTR_    P A L A G F E H H G H A G R I V G G L S Y G R T E M N Y G S R E E T A S M F Q K S K L D F E I L S K T R S R A S P T S S
 
AT5G57520.1     L - -
pt006308_POPTR_    W G K
 
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