fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57520.1 YQPNTSLRLSLPSYKN at 7/150 in AT5G57520.1
HQLNLELVLEPS at 19/150 in AT5G57520.1
DQEKSHLDLSLRL at 142/150 in AT5G57520.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt009061 FQPNTSLHLSLPSNQL in 8/126 AT5G57520.1 1st_1st 0.438848920 Ia
QEELSQLDLSLRL in 119/126
Pt006308 FQPNTSLHLSLPSNQL in 8/169 AT5G57520.1 not_1st 0.420863309 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G57520.1     MDYQPNTSLRLSLPSYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQRK
pt009061_POPTR_ MDFQPNTSLHLSLPS---NQLNLELVLEPSSSSSSSPHSP------AEPRIFSCNYCRRK
pt006308_POPTR_ MDFQPNTSLHLSLPS---NQLNLELVLEPSSSSSR--HSP------AEPRIFSCNYCQRK
                **:******:*****   :************ **    *.       :**:******:**

AT5G57520.1     FYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQP-----YPFSGR----------
pt009061_POPTR_ FYSSQALGGHQNAHKLERTLAKKSREMSSSVRAHGRSNPR--------------------
pt006308_POPTR_ FYSSQALGGHQNAHKLERTLAKKSREMSSSVRAHGGSNPRSESSYSMSGSTYPRDHQPAL
                **************************:  * .: . .:*                     

AT5G57520.1     --FELYGRGYQGFLESGGSRDFSARRVPES-GLDQDQ----EKSHLDLSLRL--------
pt009061_POPTR_ --FEHHGHAG-----VGGSWSLVY-RTE---NVQEEL------SQLDLSLRL--------
pt006308_POPTR_ AGFEHHGHAGR---IVGG---LSYGRTEMNYGSREETASMFQKSKLDFEILSKTRSRASP
                  ** :*:.       **   :   *.    .  ::       *:**:.:          

AT5G57520.1     ------
pt009061_POPTR_ ------
pt006308_POPTR_ TSSWGK
BoxShade v3.31 C (beta, 970507) Output
AT5G57520.1     M D Y Q P N T S L R L S L P S Y K N H Q L N L E L V L E P S S M S S S S S S S T N S S S C L E Q P R V F S C N Y C Q R K
pt009061_POPTR_    M D F Q P N T S L H L S L P S - - - N Q L N L E L V L E P S S S S S S S P H S P - - - - - - A E P R I F S C N Y C R R K
pt006308_POPTR_    M D F Q P N T S L H L S L P S - - - N Q L N L E L V L E P S S S S S R - - H S P - - - - - - A E P R I F S C N Y C Q R K
 
AT5G57520.1     F Y S S Q A L G G H Q N A H K L E R T L A K K S R E L F R S S N T V D S D Q P - - - - - Y P F S G R - - - - - - - - - -
pt009061_POPTR_    F Y S S Q A L G G H Q N A H K L E R T L A K K S R E M S S S V R A H G R S N P R - - - - - - - - - - - - - - - - - - - -
pt006308_POPTR_    F Y S S Q A L G G H Q N A H K L E R T L A K K S R E M S S S V R A H G G S N P R S E S S Y S M S G S T Y P R D H Q P A L
 
AT5G57520.1     - - F E L Y G R G Y Q G F L E S G G S R D F S A R R V P E S - G L D Q D Q - - - - E K S H L D L S L R L - - - - - - - -
pt009061_POPTR_    - - F E H H G H A G - - - - - V G G S W S L V Y - R T E - - - N V Q E E L - - - - - - S Q L D L S L R L - - - - - - - -
pt006308_POPTR_    A G F E H H G H A G R - - - I V G G - - - L S Y G R T E M N Y G S R E E T A S M F Q K S K L D F E I L S K T R S R A S P
 
AT5G57520.1     - - - - - -
pt009061_POPTR_    - - - - - -
pt006308_POPTR_    T S S W G K
 
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