fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G57520.1 YQPNTSLRLSLPSYKN at 7/150 in AT5G57520.1
HQLNLELVLEPS at 19/150 in AT5G57520.1
DQEKSHLDLSLRL at 142/150 in AT5G57520.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm046246 HDDENHLNLDLLLEPS in 20/136 AT5G57520.1 1st_1st 0.388489208 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G57520.1     MDYQ-PNTSLRLSLPSYKNHQLNLELVLEPSSMSSSSSSSTNSSSCLEQPRVFSCNYCQR
gm046246_Glyma1 MNFHNPNTSLHLSQHDDENH-LNLDLLLEP----SSSSSSSPSPICSMEPRIFSCNYCQR
                *::: *****:**  . :** ***:*:***    ******: *. *  :**:********

AT5G57520.1     KFYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQPYPFSGRFELYGRGYQ--GFL
gm046246_Glyma1 KFYSSQALGGHQNAHKLERTLAKKSREL---------------SLNMQSYGAAEQRSNF-
                ****************************               * .:: ** . *  .* 

AT5G57520.1     ESGGSRDFSARRVPESGLDQDQEKSHLDLSLRL---------
gm046246_Glyma1 --GASHHLGHRAL---GVVDNQGQSYVRLGGRKEFSYGSKEG
                  *.*:.:. * :   *: ::* :*:: *. *
BoxShade v3.31 C (beta, 970507) Output
AT5G57520.1     M D Y Q - P N T S L R L S L P S Y K N H Q L N L E L V L E P S S M S S S S S S S T N S S S C L E Q P R V F S C N Y C Q R
gm046246_Glyma1    M N F H N P N T S L H L S Q H D D E N H - L N L D L L L E P - - - - S S S S S S S P S P I C S M E P R I F S C N Y C Q R
 
AT5G57520.1     K F Y S S Q A L G G H Q N A H K L E R T L A K K S R E L F R S S N T V D S D Q P Y P F S G R F E L Y G R G Y Q - - G F L
gm046246_Glyma1    K F Y S S Q A L G G H Q N A H K L E R T L A K K S R E L - - - - - - - - - - - - - - - S L N M Q S Y G A A E Q R S N F -
 
AT5G57520.1     E S G G S R D F S A R R V P E S G L D Q D Q E K S H L D L S L R L - - - - - - - - -
gm046246_Glyma1    - - G A S H H L G H R A L - - - G V V D N Q G Q S Y V R L G G R K E F S Y G S K E G
 
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