fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G59820.1 GKRVACLDLSLGMVDN at 139/162 in AT5G59820.1
LNLKLELGRTVY at 151/162 in AT5G59820.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt022468 SKRVLCLDLSLALPMD in 162/193 AT5G59820.1 1st_1st 0.388379204 Ib
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G59820.1     --MVAISEIKSTVDVTAANCLMLLSRVGQENVDGGDQK--------------RVFTCKTC
pt022468_POPTR_ MSSITMKRGREEGELDMANCLMLLYKVGKAD----DHELPTNYKSSSPSGAGRLFSCKTC
                   :::.. :.  ::  ******* :**: :    *::              *:*:****

AT5G59820.1     LKQFHSFQALGGHRASHKKPNNDALSSGLMKKV-----KTSSHPCPICGVEFPMGQALGG
pt022468_POPTR_ NKNFSSFQALGGHRASHKKPKLVGSTGNLLMKLPNSPPKPKNHQCSICGLEFPIGQALGG
                 *:* ***************:  . :..*: *:     *...* *.***:***:******

AT5G59820.1     HMRRHR-----NESGAAGGALVTRALLPEPTVTTLKKSSSGKRVACLDLSLGM-VDNLNL
pt022468_POPTR_ HMRRHRAGNIDATSNSADNELAVTYPPFLPAIPVLKKSNSSKRVLCLDLSLALPMDQNES
                ******       *.:*.. *..      *::..****.*.*** ******.: :*: : 

AT5G59820.1     KLEL----GRTVY----
pt022468_POPTR_ ELQLRKAGTRPVLKCFI
                :*:*     *.*
BoxShade v3.31 C (beta, 970507) Output
AT5G59820.1     - - M V A I S E I K S T V D V T A A N C L M L L S R V G Q E N V D G G D Q K - - - - - - - - - - - - - - R V F T C K T C
pt022468_POPTR_    M S S I T M K R G R E E G E L D M A N C L M L L Y K V G K A D - - - - D H E L P T N Y K S S S P S G A G R L F S C K T C
 
AT5G59820.1     L K Q F H S F Q A L G G H R A S H K K P N N D A L S S G L M K K V - - - - - K T S S H P C P I C G V E F P M G Q A L G G
pt022468_POPTR_    N K N F S S F Q A L G G H R A S H K K P K L V G S T G N L L M K L P N S P P K P K N H Q C S I C G L E F P I G Q A L G G
 
AT5G59820.1     H M R R H R - - - - - N E S G A A G G A L V T R A L L P E P T V T T L K K S S S G K R V A C L D L S L G M - V D N L N L
pt022468_POPTR_    H M R R H R A G N I D A T S N S A D N E L A V T Y P P F L P A I P V L K K S N S S K R V L C L D L S L A L P M D Q N E S
 
AT5G59820.1     K L E L - - - - G R T V Y - - - -
pt022468_POPTR_    E L Q L R K A G T R P V L K C F I
 
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