fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G60480.1 TTSSMSLNLKL at 185/191 in AT5G60480.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm050382 not found in 308aa AT3G28920.1 1st_not 0.421203438 II
Pt020175 not found in 334aa AT3G28920.1 1st_not 0.421203438 II
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Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G60480.1     ------------------------------------------------------------
gm050382_Glyma1 MDITP---TTTIINTTTTP-------SAAKSPEHETETPTRITTPITPTTTKTLSFSNGV
pt020175_POPTR_ MDITPATATATATGTATTPTNNNTNTTIPKSPEADTGTPTRI------PQTKPLSFTNGV
                                                                            

AT5G60480.1     -------------------MVVLYNECLKNHAVSLGGHALDGCGEFTPKSTTILTDPPSL
gm050382_Glyma1 LKRH--HHHHLHH---PMPAVVTYKECLKNHAANLGGLALDGCGEFMPSPTATAADPSSI
pt020175_POPTR_ LKRHHPHHHHLHNHFAPPPVVITYKECLKNHAATIGGHALDGCGEFMPSPTATHTDPTSL
                                    *: *:*******..:** ******** *..*:  :**.*:

AT5G60480.1     RCDACGCHRNFHRRSPSDG-----------FSQH---------------RSP----PSPL
gm050382_Glyma1 KCAACGCHRNFHRREPEDPPITSNTTHVIEYQPHHRHHPPPPLHAAAAARSPNSASPPPI
pt020175_POPTR_ KCAACGCHRNFHRREPEDSPPHTTAITTIEYQPHHRHHPPPPQAHPQHNRSPNSASPPPI
                :* ***********.*.*            :. *               ***    *.*:

AT5G60480.1     QLQPLAPVPNLLLSLSSGFF---------GPSDQEVKNKFTVERDVRKTAMIKKHKRTKF
gm050382_Glyma1 SSSYYPSAPHMLLALSAGLA---------APPESTAAPS---------AALSRKRFRTKF
pt020175_POPTR_ SSSYYPSAPHMLLALSGGVSGLNENVNINAPPRAGSSP--------------RKRFRTKF
                . .  ...*::**:**.*.          .*.                    :*: ****

AT5G60480.1     TAEQKVKMRGFAERAGWKINGWDEKWVREFCSEVGIERKVLKVWIHNNK-----------
gm050382_Glyma1 SQEQKEKMHKFAEKVGWKIQKRDEDLIHEFCNEVGVDRSVLKVWMHNNKNTFAKK-----
pt020175_POPTR_ SQSQKERMHQFAEKVGWKMQKRDEDLVQEFCNEVGVDRSALKVWMHNNKNSFGKKEHLNG
                : .** :*: ***:.***::  **. ::***.***::*..****:****           

AT5G60480.1     --------------YFNNGRSRDTT-------------------------SSMSLNLKL
gm050382_Glyma1 --DNNIVFENPNNNHGSGSGGGEDPAEDPSRNHY------GGVNVGANGSSSSS-----
pt020175_POPTR_ NNDDNIRSSNLENSYSNNESNKDITNNNNNNNHHHFENDSHAAHVGTNGSSSSS-----
                              : ..  . : .                         ** *
BoxShade v3.31 C (beta, 970507) Output
AT5G60480.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm050382_Glyma1    M D I T P - - - T T T I I N T T T T P - - - - - - - S A A K S P E H E T E T P T R I T T P I T P T T T K T L S F S N G V
pt020175_POPTR_    M D I T P A T A T A T A T G T A T T P T N N N T N T T I P K S P E A D T G T P T R I - - - - - - P Q T K P L S F T N G V
 
AT5G60480.1     - - - - - - - - - - - - - - - - - - - M V V L Y N E C L K N H A V S L G G H A L D G C G E F T P K S T T I L T D P P S L
gm050382_Glyma1    L K R H - - H H H H L H H - - - P M P A V V T Y K E C L K N H A A N L G G L A L D G C G E F M P S P T A T A A D P S S I
pt020175_POPTR_    L K R H H P H H H H L H N H F A P P P V V I T Y K E C L K N H A A T I G G H A L D G C G E F M P S P T A T H T D P T S L
 
AT5G60480.1     R C D A C G C H R N F H R R S P S D G - - - - - - - - - - - F S Q H - - - - - - - - - - - - - - - R S P - - - - P S P L
gm050382_Glyma1    K C A A C G C H R N F H R R E P E D P P I T S N T T H V I E Y Q P H H R H H P P P P L H A A A A A R S P N S A S P P P I
pt020175_POPTR_    K C A A C G C H R N F H R R E P E D S P P H T T A I T T I E Y Q P H H R H H P P P P Q A H P Q H N R S P N S A S P P P I
 
AT5G60480.1     Q L Q P L A P V P N L L L S L S S G F F - - - - - - - - - G P S D Q E V K N K F T V E R D V R K T A M I K K H K R T K F
gm050382_Glyma1    S S S Y Y P S A P H M L L A L S A G L A - - - - - - - - - A P P E S T A A P S - - - - - - - - - A A L S R K R F R T K F
pt020175_POPTR_    S S S Y Y P S A P H M L L A L S G G V S G L N E N V N I N A P P R A G S S P - - - - - - - - - - - - - - R K R F R T K F
 
AT5G60480.1     T A E Q K V K M R G F A E R A G W K I N G W D E K W V R E F C S E V G I E R K V L K V W I H N N K - - - - - - - - - - -
gm050382_Glyma1    S Q E Q K E K M H K F A E K V G W K I Q K R D E D L I H E F C N E V G V D R S V L K V W M H N N K N T F A K K - - - - -
pt020175_POPTR_    S Q S Q K E R M H Q F A E K V G W K M Q K R D E D L V Q E F C N E V G V D R S A L K V W M H N N K N S F G K K E H L N G
 
AT5G60480.1     - - - - - - - - - - - - - - Y F N N G R S R D T T - - - - - - - - - - - - - - - - - - - - - - - - - S S M S L N L K L
gm050382_Glyma1    - - D N N I V F E N P N N N H G S G S G G G E D P A E D P S R N H Y - - - - - - G G V N V G A N G S S S S S - - - - -
pt020175_POPTR_    N N D D N I R S S N L E N S Y S N N E S N K D I T N N N N N N N H H H F E N D S H A A H V G T N G S S S S S - - - - -
 
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