fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G60480.1 TTSSMSLNLKL at 185/191 in AT5G60480.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt020175 not found in 334aa AT3G28920.1 1st_not 0.421203438 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G60480.1     ------------------------------------------------------------
pt020175_POPTR_ MDITPATATATATGTATTPTNNNTNTTIPKSPEADTGTPTRIPQTKPLSFTNGVLKRHHP
                                                                            

AT5G60480.1     -------------MVVLYNECLKNHAVSLGGHALDGCGEFTPKSTTILTDPPSLRCDACG
pt020175_POPTR_ HHHHLHNHFAPPPVVITYKECLKNHAATIGGHALDGCGEFMPSPTATHTDPTSLKCAACG
                             :*: *:*******.::*********** *..*:  ***.**:* ***

AT5G60480.1     CHRNFHRRSPSDG------------FSQHRSPPSPLQLQPL----------APV------
pt020175_POPTR_ CHRNFHRREPEDSPPHTTAITTIEYQPHHRHHPPPPQAHPQHNRSPNSASPPPISSSYYP
                ********.*.*.             .:**  *.* * :*           .*:      

AT5G60480.1     --PNLLLSLSSGFFGPSDQEVKNKFTVERDVRKTAMIKKHKRTKFTAEQKVKMRGFAERA
pt020175_POPTR_ SAPHMLLALSGGVSG-----LNENVNINAPPRAGSSPRKRFRTKFSQSQKERMHQFAEKV
                  *::**:**.*. *     ::::..::   *  :  :*: ****: .** :*: ***:.

AT5G60480.1     GWKINGWDEKWVREFCSEVGIERKVLKVWIHNNK-------------------------Y
pt020175_POPTR_ GWKMQKRDEDLVQEFCNEVGVDRSALKVWMHNNKNSFGKKEHLNGNNDDNIRSSNLENSY
                ***::  **. *:***.***::*..****:****                         *

AT5G60480.1     FNNGRSRDTT-------------------------SSMSLNLKL
pt020175_POPTR_ SNNESNKDITNNNNNNNHHHFENDSHAAHVGTNGSSSSS-----
                 **  .:* *                         ** *
BoxShade v3.31 C (beta, 970507) Output
AT5G60480.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt020175_POPTR_    M D I T P A T A T A T A T G T A T T P T N N N T N T T I P K S P E A D T G T P T R I P Q T K P L S F T N G V L K R H H P
 
AT5G60480.1     - - - - - - - - - - - - - M V V L Y N E C L K N H A V S L G G H A L D G C G E F T P K S T T I L T D P P S L R C D A C G
pt020175_POPTR_    H H H H L H N H F A P P P V V I T Y K E C L K N H A A T I G G H A L D G C G E F M P S P T A T H T D P T S L K C A A C G
 
AT5G60480.1     C H R N F H R R S P S D G - - - - - - - - - - - - F S Q H R S P P S P L Q L Q P L - - - - - - - - - - A P V - - - - - -
pt020175_POPTR_    C H R N F H R R E P E D S P P H T T A I T T I E Y Q P H H R H H P P P P Q A H P Q H N R S P N S A S P P P I S S S Y Y P
 
AT5G60480.1     - - P N L L L S L S S G F F G P S D Q E V K N K F T V E R D V R K T A M I K K H K R T K F T A E Q K V K M R G F A E R A
pt020175_POPTR_    S A P H M L L A L S G G V S G - - - - - L N E N V N I N A P P R A G S S P R K R F R T K F S Q S Q K E R M H Q F A E K V
 
AT5G60480.1     G W K I N G W D E K W V R E F C S E V G I E R K V L K V W I H N N K - - - - - - - - - - - - - - - - - - - - - - - - - Y
pt020175_POPTR_    G W K M Q K R D E D L V Q E F C N E V G V D R S A L K V W M H N N K N S F G K K E H L N G N N D D N I R S S N L E N S Y
 
AT5G60480.1     F N N G R S R D T T - - - - - - - - - - - - - - - - - - - - - - - - - S S M S L N L K L
pt020175_POPTR_    S N N E S N K D I T N N N N N N N H H H F E N D S H A A H V G T N G S S S S S - - - - -
 
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