fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G65410.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt040604 not found in 262aa AT4G24660.1 1st_not 0.603389830 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G65410.1     MEFEDNNNNNDEEQEEDMNLHEEEEDDDAVYDSPPLSRVLPKASTESHETTGTTSTGGGG
pt040604_POPTR_ MEFDEH-----EDQEEEMT---------------GMAVMPPGYDSISNSVAARSKIGPAG
                ***:::     *:***:*.                :: : *  .: *:..:. :. * .*

AT5G65410.1     GFMVVHGGGG------------SRFRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDA
pt040604_POPTR_ G-----GGEGASTTTANTNTRKSSIRYRECQKNHAVGIGGHALDGCGEFMAAGDEGTLDA
                *     ** *            * :*:*** **:**.*****:*******.** ***:**

AT5G65410.1     LKCAACGCHRNFHRKE---------LPYFHHAPPQHQPPPPPPGFYRLPAPVSY----RP
pt040604_POPTR_ LKCAACNCHRNFHRKESGGGGGEVILYHGHH----HQQQPQFSPYYRAPPPTGYLHHLTP
                ******.*********         * : **    **  *  . :** *.*..*     *

AT5G65410.1     PPSQAPPLQLALPPPQ---------RERSEDPMETSSAEAGGG------IRKRHRTKFTA
pt040604_POPTR_ TPQSRP---LALPAASGGGAAAAAGYSREEEDVSNPSSSGGGGGGGGSSSKKRHRTKFTQ
                .*.. *   ****...          .*.*: :...*:..***       :******** 

AT5G65410.1     EQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSPSPLHHH
pt040604_POPTR_ EQKEKMLAFAESLGWRIQKHDEAAVEQFCAETGVKRHVLKVWMHNNKHTLGKKP------
                ****:***:** :*****::*: .:::** **** *:*****:*********.*      

AT5G65410.1     QAPPPPPPQSSFHHEQDQP
pt040604_POPTR_ -------------------
BoxShade v3.31 C (beta, 970507) Output
AT5G65410.1     M E F E D N N N N N D E E Q E E D M N L H E E E E D D D A V Y D S P P L S R V L P K A S T E S H E T T G T T S T G G G G
pt040604_POPTR_    M E F D E H - - - - - E D Q E E E M T - - - - - - - - - - - - - - - G M A V M P P G Y D S I S N S V A A R S K I G P A G
 
AT5G65410.1     G F M V V H G G G G - - - - - - - - - - - - S R F R F R E C L K N Q A V N I G G H A V D G C G E F M P A G I E G T I D A
pt040604_POPTR_    G - - - - - G G E G A S T T T A N T N T R K S S I R Y R E C Q K N H A V G I G G H A L D G C G E F M A A G D E G T L D A
 
AT5G65410.1     L K C A A C G C H R N F H R K E - - - - - - - - - L P Y F H H A P P Q H Q P P P P P P G F Y R L P A P V S Y - - - - R P
pt040604_POPTR_    L K C A A C N C H R N F H R K E S G G G G G E V I L Y H G H H - - - - H Q Q Q P Q F S P Y Y R A P P P T G Y L H H L T P
 
AT5G65410.1     P P S Q A P P L Q L A L P P P Q - - - - - - - - - R E R S E D P M E T S S A E A G G G - - - - - - I R K R H R T K F T A
pt040604_POPTR_    T P Q S R P - - - L A L P A A S G G G A A A A A G Y S R E E E D V S N P S S S G G G G G G G G S S S K K R H R T K F T Q
 
AT5G65410.1     E Q K E R M L A L A E R I G W R I Q R Q D D E V I Q R F C Q E T G V P R Q V L K V W L H N N K H T L G K S P S P L H H H
pt040604_POPTR_    E Q K E K M L A F A E S L G W R I Q K H D E A A V E Q F C A E T G V K R H V L K V W M H N N K H T L G K K P - - - - - -
 
AT5G65410.1     Q A P P P P P P Q S S F H H E Q D Q P
pt040604_POPTR_    - - - - - - - - - - - - - - - - - - -
 
0