fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G65670.1 SLKATELTLGLPGSQS at 66/338 in AT5G65670.1
SLKATELTLGLPGSQS at 66/336 in AT5G65670.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sm019334 not found in 130aa AT5G65670.1 1st_1st 0.2176 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G65670.1     MSPEEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGSSTLSPLAEDDKAT
Sm019334_Selmo1 ------------------------------------------------------------
                                                                            

AT5G65670.1     ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNK
Sm019334_Selmo1 ------------------------------------------------------------
                                                                            

AT5G65670.1     RGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPAA
Sm019334_Selmo1 ------------------------------------------------------------
                                                                            

AT5G65670.1     KAQIVGWPPVRSYRKNTLATTCKNSDEVDGRP--GSGALFVKVSMDGAPYLRKVDLRSYT
Sm019334_Selmo1 ----VGWPPVQSFRKNSLAAPTVHH----AKPHQAAGSQLVKVYMDGVPIGRKVSLRTHS
                    ******:*:***:**:.  :     .:*  .:*: :*** ***.*  ***.**:::

AT5G65670.1     NYGELSSALEKMFTTFTLGQCGSNGAAGKD-MLSETKLKDLLNGKDYVLTYEDKDGDWML
Sm019334_Selmo1 SYERLSGALEEMFRRFI---------SGNDKLVSDTKKFNFIYGSDYVLTYEDKDGDLML
                .* .**.***:**  *          :*:* ::*:**  ::: *.************ **

AT5G65670.1     VGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMRA
Sm019334_Selmo1 VGDVPWEMFVGAVKRLRIMKGSEAIGL--------------
                *********:.. *:*:****.:****
BoxShade v3.31 C (beta, 970507) Output
AT5G65670.1     M S P E E E L Q S N V S V A S S S P T S N C I S R N T L G G L K E H N Y L G L S D C S S V G S S T L S P L A E D D K A T
Sm019334_Selmo1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT5G65670.1     I S L K A T E L T L G L P G S Q S P A R D T E L N L L S P A K L D E K P F F P L L P S K D E I C S S S Q K N N A S G N K
Sm019334_Selmo1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT5G65670.1     R G F S D T M D Q F A E A K S S V Y T E K N W M F P E A A A T Q S V T K K D V P Q N I P K G Q S S T T N N S S S P P A A
Sm019334_Selmo1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT5G65670.1     K A Q I V G W P P V R S Y R K N T L A T T C K N S D E V D G R P - - G S G A L F V K V S M D G A P Y L R K V D L R S Y T
Sm019334_Selmo1    - - - - V G W P P V Q S F R K N S L A A P T V H H - - - - A K P H Q A A G S Q L V K V Y M D G V P I G R K V S L R T H S
 
AT5G65670.1     N Y G E L S S A L E K M F T T F T L G Q C G S N G A A G K D - M L S E T K L K D L L N G K D Y V L T Y E D K D G D W M L
Sm019334_Selmo1    S Y E R L S G A L E E M F R R F I - - - - - - - - - S G N D K L V S D T K K F N F I Y G S D Y V L T Y E D K D G D L M L
 
AT5G65670.1     V G D V P W E M F I D V C K K L K I M K G C D A I G L A A A P R A M E K S K M R A
Sm019334_Selmo1    V G D V P W E M F V G A V K R L R I M K G S E A I G L - - - - - - - - - - - - - -
 
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