fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G65670.1 SLKATELTLGLPGSQS at 66/338 in AT5G65670.1
SLKATELTLGLPGSQS at 66/336 in AT5G65670.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt011954 NLKETELRLGLPGYQS in 60/349 AT4G29080.1 not_not 0.4176 III
Pt030401 NMKETELRLGLPGSQS in 66/335 AT4G29080.1 not_not 0.4176 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G65670.1     MSPEEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSV------------GSS
pt030401_POPTR_ -------------MYSIP-------------KEHDYIGLSETPSMENISEKLSSSSTSSS
pt011954_POPTR_ -------------MSSIP-------------KEHDYIGLSETPSMEKISDKLSS---SSS
                               * *             ***:*:***: .*:            .**

AT5G65670.1     TLSPLAEDD-------------KATISLKATELTLGLPGSQSPARDTELNLLSPA-----
pt030401_POPTR_ TLSTEEKNNSSSSNSNNNNKNNNTSLNMKETELRLGLPGSQSPERKPTV----PAAGVSL
pt011954_POPTR_ TLSTEENIN---SNSNSNSNSTNTSLNLKETELRLGLPGYQSPERKLTL----PAAGVSL
                ***.  : :             ::::.:* *** ***** *** *.  :    **     

AT5G65670.1     -----KLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMF
pt030401_POPTR_ VGKDIDTNNTNAYSLIPV---------KNLVSGAKRVFSDAIDG---------STGKWVF
pt011954_POPTR_ FGKDIDTNNTNGYPLRPL---------KNLVSGTKRGFSDAIVG---------SSGKWVF
                     . ::.  :.* *          ** .** ** ***::           :  :*:*

AT5G65670.1     -------------------------PEAAATQSVTKK-DVPQNIPK------GQSSTTNN
pt030401_POPTR_ SG------------------GDNGNPQKSRVAGPAKK-DVAQS-PKPVQEKNSQVAAANE
pt011954_POPTR_ SGSNGSEVDLGKGAILFSPRGDNGNSQKSCVAGPAKKDDVAQS-PKPVQEKISQVAAANE
                                         .: : . . :** **.*. **      .* :::*:

AT5G65670.1     SSSPPAAKAQIVGWPPVRSYRKNTLATT-CKNSDEVDGRPGSGALFVKVSMDGAPYLRKV
pt030401_POPTR_ NSSAPAAKTQVVGWPPIRSFRKNTMASSLAKNNEDVDGKSGYGYLYVKVSMDGAPYLRKV
pt011954_POPTR_ NSSAPAAKAQVVGWPPIRSFRKNTMASSLVKNNEDVEGKSGYGCLYVKVSMDGAPYLRKV
                .**.****:*:*****:**:****:*::  **.::*:*:.* * *:**************

AT5G65670.1     DLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKD
pt030401_POPTR_ DLKTYGNYLELSSALEKMFGCFTIGQCGSHGLAARDGLTESCLKD-LHGSEYVLTFEDKD
pt011954_POPTR_ DLKTYSNYLELSSALEKMFSCFTIGQCGSHGLRGQDGLTESRLKDILHGSEYVLTYEDKD
                **::* ** **********  **:*****:*  .:* *:*: *** *:*.:****:****

AT5G65670.1     GDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMRA
pt030401_POPTR_ GDWMLVGDVPWDMFTDSCRRLRIMKGSEAIGL--APRAMEKCKNRN
pt011954_POPTR_ GDWMLVGDVPWDMFTNSCRRLRIMKGSEAIGL--APRAMEKCKNRN
                ***********:** : *::*:****.:****  *******.* *
BoxShade v3.31 C (beta, 970507) Output
AT5G65670.1     M S P E E E L Q S N V S V A S S S P T S N C I S R N T L G G L K E H N Y L G L S D C S S V - - - - - - - - - - - - G S S
pt030401_POPTR_    - - - - - - - - - - - - - M Y S I P - - - - - - - - - - - - - K E H D Y I G L S E T P S M E N I S E K L S S S S T S S S
pt011954_POPTR_    - - - - - - - - - - - - - M S S I P - - - - - - - - - - - - - K E H D Y I G L S E T P S M E K I S D K L S S - - - S S S
 
AT5G65670.1     T L S P L A E D D - - - - - - - - - - - - - K A T I S L K A T E L T L G L P G S Q S P A R D T E L N L L S P A - - - - -
pt030401_POPTR_    T L S T E E K N N S S S S N S N N N N K N N N T S L N M K E T E L R L G L P G S Q S P E R K P T V - - - - P A A G V S L
pt011954_POPTR_    T L S T E E N I N - - - S N S N S N S N S T N T S L N L K E T E L R L G L P G Y Q S P E R K L T L - - - - P A A G V S L
 
AT5G65670.1     - - - - - K L D E K P F F P L L P S K D E I C S S S Q K N N A S G N K R G F S D T M D Q F A E A K S S V Y T E K N W M F
pt030401_POPTR_    V G K D I D T N N T N A Y S L I P V - - - - - - - - - K N L V S G A K R V F S D A I D G - - - - - - - - - S T G K W V F
pt011954_POPTR_    F G K D I D T N N T N G Y P L R P L - - - - - - - - - K N L V S G T K R G F S D A I V G - - - - - - - - - S S G K W V F
 
AT5G65670.1     - - - - - - - - - - - - - - - - - - - - - - - - - P E A A A T Q S V T K K - D V P Q N I P K - - - - - - G Q S S T T N N
pt030401_POPTR_    S G - - - - - - - - - - - - - - - - - - G D N G N P Q K S R V A G P A K K - D V A Q S - P K P V Q E K N S Q V A A A N E
pt011954_POPTR_    S G S N G S E V D L G K G A I L F S P R G D N G N S Q K S C V A G P A K K D D V A Q S - P K P V Q E K I S Q V A A A N E
 
AT5G65670.1     S S S P P A A K A Q I V G W P P V R S Y R K N T L A T T - C K N S D E V D G R P G S G A L F V K V S M D G A P Y L R K V
pt030401_POPTR_    N S S A P A A K T Q V V G W P P I R S F R K N T M A S S L A K N N E D V D G K S G Y G Y L Y V K V S M D G A P Y L R K V
pt011954_POPTR_    N S S A P A A K A Q V V G W P P I R S F R K N T M A S S L V K N N E D V E G K S G Y G C L Y V K V S M D G A P Y L R K V
 
AT5G65670.1     D L R S Y T N Y G E L S S A L E K M F T T F T L G Q C G S N G A A G K D M L S E T K L K D L L N G K D Y V L T Y E D K D
pt030401_POPTR_    D L K T Y G N Y L E L S S A L E K M F G C F T I G Q C G S H G L A A R D G L T E S C L K D - L H G S E Y V L T F E D K D
pt011954_POPTR_    D L K T Y S N Y L E L S S A L E K M F S C F T I G Q C G S H G L R G Q D G L T E S R L K D I L H G S E Y V L T Y E D K D
 
AT5G65670.1     G D W M L V G D V P W E M F I D V C K K L K I M K G C D A I G L A A A P R A M E K S K M R A
pt030401_POPTR_    G D W M L V G D V P W D M F T D S C R R L R I M K G S E A I G L - - A P R A M E K C K N R N
pt011954_POPTR_    G D W M L V G D V P W D M F T N S C R R L R I M K G S E A I G L - - A P R A M E K C K N R N
 
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