fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G66940.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt036659 not found in 248aa AT3G50410.1 1st_not 0.403794037 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G66940.1     MPSEFSESRRVPKIPHGQGGSV----AIPTDQQEQLSCPRCESTNTKFCYYNNYNFSQPR
pt036659_POPTR_ MPAELSSSEAARRAQQSTAATLTKPGGAPPQEQEHLPCPRCDSTNTKFCYYNNYNFSQPR
                **:*:*.*. . :  :. ..::    . *.::**:*.****:******************

AT5G66940.1     HFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRSRTYSSAATTSVVGSRN------FPLQAT
pt036659_POPTR_ HFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRSRT-SATSPASFMGPMTGTNIDGLPLPAT
                *********************** :**.:***** *:::.:*.:*. .      :** **

AT5G66940.1     PVLFPQSSSNG-----GITTAKGSASSFYGGFSSLINYNAAVSRNGPGGGFNGPDAFGLG
pt036659_POPTR_ PVLLPLTANQGLSVHFGGGDGKGNGGGLGGSFTSLLN------TQGP-AGFLALNGFGLG
                ***:* ::.:*     *   .**....: *.*:**:*       :** .** . :.****

AT5G66940.1     LGHGSYYEDVRYGQGITVWPF--------SSGATDAATTTSHIAQIPATWQFE-GQESKV
pt036659_POPTR_ IGPG--IEDVNFALGRGLWPFPGMGDVGASVGGNGGAAVTAGLGN---TWQFENGQEN--
                :* *   ***.:. *  :***        * *....*:.*: :.:   ***** ***.  

AT5G66940.1     GFVSGDYVA--------------
pt036659_POPTR_ GFVGGDCFSWPDLAISTPGNGLK
                ***.** .:
BoxShade v3.31 C (beta, 970507) Output
AT5G66940.1     M P S E F S E S R R V P K I P H G Q G G S V - - - - A I P T D Q Q E Q L S C P R C E S T N T K F C Y Y N N Y N F S Q P R
pt036659_POPTR_    M P A E L S S S E A A R R A Q Q S T A A T L T K P G G A P P Q E Q E H L P C P R C D S T N T K F C Y Y N N Y N F S Q P R
 
AT5G66940.1     H F C K S C R R Y W T H G G T L R D I P V G G V S R K S S K R S R T Y S S A A T T S V V G S R N - - - - - - F P L Q A T
pt036659_POPTR_    H F C K S C R R Y W T H G G T L R D I P V G G G T R K N A K R S R T - S A T S P A S F M G P M T G T N I D G L P L P A T
 
AT5G66940.1     P V L F P Q S S S N G - - - - - G I T T A K G S A S S F Y G G F S S L I N Y N A A V S R N G P G G G F N G P D A F G L G
pt036659_POPTR_    P V L L P L T A N Q G L S V H F G G G D G K G N G G G L G G S F T S L L N - - - - - - T Q G P - A G F L A L N G F G L G
 
AT5G66940.1     L G H G S Y Y E D V R Y G Q G I T V W P F - - - - - - - - S S G A T D A A T T T S H I A Q I P A T W Q F E - G Q E S K V
pt036659_POPTR_    I G P G - - I E D V N F A L G R G L W P F P G M G D V G A S V G G N G G A A V T A G L G N - - - T W Q F E N G Q E N - -
 
AT5G66940.1     G F V S G D Y V A - - - - - - - - - - - - - -
pt036659_POPTR_    G F V G G D C F S W P D L A I S T P G N G L K
 
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