fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G66940.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt036659 not found in 248aa AT3G50410.1 1st_not 0.403794037 II
Pt002429 not found in 253aa AT3G50410.1 not_not 0.401084010 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G66940.1     MPSEFSESRRVPKIPHGQ-------GGSVAIPTDQQEQLSCPRCESTNTKFCYYNNYNFS
pt002429_POPTR_ MPTELSSSEKTRRPPLSTTPTSNKPGGA---PPQEQEHLPCPRCDSTNTKFCYYNNYNFS
pt036659_POPTR_ MPAELSSSEAARRAQQSTAATLTKPGGA---PPQEQEHLPCPRCDSTNTKFCYYNNYNFS
                **:*:*.*. . :   .        **:   *.::**:*.****:***************

AT5G66940.1     QPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRSRTYSSAATTSVVGS------RNFPL
pt002429_POPTR_ QPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRSRT-SATTAASFAGPIIDNNIDNLPL
pt036659_POPTR_ QPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRSRT-SATSPASFMGPMTGTNIDGLPL
                ************************** :**.:***** *:::.:*. *.       .:**

AT5G66940.1     QATPVLFPQSSSN------GGITTAKGSA----SSFYGGFSSLINYNAAVSRNGPGGGFN
pt002429_POPTR_ PATPVLVPLTASQGFSVHFGGGSDGKGNGGCGSGALGGSFTSLLN------TPGP-AGIL
pt036659_POPTR_ PATPVLLPLTANQGLSVHFGGG-DGKGNG----GGLGGSFTSLLN------TQGP-AGFL
                 *****.* ::.:      **   .**..    ..: *.*:**:*        ** .*: 

AT5G66940.1     GPDAFGLGLGHGSYYEDVRYGQGITVWPF--------SSGATDAATTTSHIAQIPATWQF
pt002429_POPTR_ ALGRFGHGLGHG--LEDVGCGLGRGLWSFPGIGDSGAGVGGHGGVTVT---AGLDNTWQF
pt036659_POPTR_ ALNGFGLGIGPG--IEDVNFALGRGLWPFPGMGDVGASVGGNGGAAVT---AGLGNTWQF
                . . ** *:* *   ***  . *  :*.*        . *. ...:.*   * :  ****

AT5G66940.1     E-GQESKVGFVSGDYVA--------------
pt002429_POPTR_ GSAGQN--GFVGGDCFSWPELAISTPANGFK
pt036659_POPTR_ ENGQEN--GFVGGDCFSWPDLAISTPGNGLK
                  . :.  ***.** .:
BoxShade v3.31 C (beta, 970507) Output
AT5G66940.1     M P S E F S E S R R V P K I P H G Q - - - - - - - G G S V A I P T D Q Q E Q L S C P R C E S T N T K F C Y Y N N Y N F S
pt002429_POPTR_    M P T E L S S S E K T R R P P L S T T P T S N K P G G A - - - P P Q E Q E H L P C P R C D S T N T K F C Y Y N N Y N F S
pt036659_POPTR_    M P A E L S S S E A A R R A Q Q S T A A T L T K P G G A - - - P P Q E Q E H L P C P R C D S T N T K F C Y Y N N Y N F S
 
AT5G66940.1     Q P R H F C K S C R R Y W T H G G T L R D I P V G G V S R K S S K R S R T Y S S A A T T S V V G S - - - - - - R N F P L
pt002429_POPTR_    Q P R H F C K S C R R Y W T H G G T L R D I P V G G G T R K N A K R S R T - S A T T A A S F A G P I I D N N I D N L P L
pt036659_POPTR_    Q P R H F C K S C R R Y W T H G G T L R D I P V G G G T R K N A K R S R T - S A T S P A S F M G P M T G T N I D G L P L
 
AT5G66940.1     Q A T P V L F P Q S S S N - - - - - - G G I T T A K G S A - - - - S S F Y G G F S S L I N Y N A A V S R N G P G G G F N
pt002429_POPTR_    P A T P V L V P L T A S Q G F S V H F G G G S D G K G N G G C G S G A L G G S F T S L L N - - - - - - T P G P - A G I L
pt036659_POPTR_    P A T P V L L P L T A N Q G L S V H F G G G - D G K G N G - - - - G G L G G S F T S L L N - - - - - - T Q G P - A G F L
 
AT5G66940.1     G P D A F G L G L G H G S Y Y E D V R Y G Q G I T V W P F - - - - - - - - S S G A T D A A T T T S H I A Q I P A T W Q F
pt002429_POPTR_    A L G R F G H G L G H G - - L E D V G C G L G R G L W S F P G I G D S G A G V G G H G G V T V T - - - A G L D N T W Q F
pt036659_POPTR_    A L N G F G L G I G P G - - I E D V N F A L G R G L W P F P G M G D V G A S V G G N G G A A V T - - - A G L G N T W Q F
 
AT5G66940.1     E - G Q E S K V G F V S G D Y V A - - - - - - - - - - - - - -
pt002429_POPTR_    G S A G Q N - - G F V G G D C F S W P E L A I S T P A N G F K
pt036659_POPTR_    E N G Q E N - - G F V G G D C F S W P D L A I S T P G N G L K
 
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