|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G01060 | LHY, LHY1 | LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) |
>AT1G01060.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssSI, BstEII, BstXI, BstYI, BstZ17I, BtgI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HaeII, HgaI, HpaI, HpaII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, TliI, Tth111I, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 574 |
| AciI | C|CGC | 272, 1041, 1347, 1393 |
| AflIII | A|CPuPyGT | 1120, 1700 |
| AluI | AG|CT | 31, 130, 253, 787, 814, 835, 928, 940, 1010, 1054, 1108, 1213, 1249, 1290, 1649, 1924 |
| AlwNI | CAGNNN|CTG | 800, 1055, 1439 |
| ApaLI | G|TGCAC | 634 |
| ApoI | Pu|AATTPy | 269, 984 |
| AvaI | C|PyCGPuG | 486 |
| AvaII | G|G[AT]CC | 1391 |
| BanII | GPuGCPy|C | 1011 |
| BfaI | C|TAG | 104 |
| BsaBI | GATNN|NNATC | 1496 |
| BsaJI | C|CNNGG | 322, 655 |
| BsiHKAI | G[AT]GC[AT]|C | 634, 1011 |
| BslI | CCNNNNN|NNGG | 257 |
| BsoBI | C|PyCGPuG | 486 |
| Bsp1286I | G[GAT]GC[CAT]|C | 634, 772, 1011 |
| BsrDI | GCAATGNN| | 1161 |
| BsrI | ACTGGN| | 457, 1279 |
| BssKI | |CCNGG | 321, 1733 |
| BstAPI | GCANNNN|NTGC | 366, 641, 933 |
| BstBI | TT|CGAA | 1239 |
| BstF5I | GGATGNN| | 88, 853, 1477 |
| BstNI | CC|[AT]GG | 321, 1733 |
| BstUI | CG|CG | 574 |
| Bsu36I | CC|TNAGG | 717 |
| BtrI | CAC|GTC | 1701 |
| Cac8I | GCN|NGC | 641, 774 |
| DdeI | C|TNAG | 34, 82, 442, 716 |
| DpnI | GA-CH3|TC | 178, 1223, 1771 |
| DpnII | |GATC | 178, 1223, 1771 |
| EcoRI | G|AATTC | 984 |
| EcoRV | GAT|ATC | 876 |
| Fnu4HI | GC|NGC | 65, 927, 936, 951, 1041, 1056, 1347, 1746 |
| HaeIII | GG|CC | 385, 963 |
| HhaI | GCG|C | 1101 |
| HinP1I | G|CGC | 1101 |
| HincII | GTPy|PuAC | 906 |
| HindIII | A|AGCTT | 254, 1650, 1925 |
| HinfI | G|ANTC | 404, 920, 993, 1266, 1302, 1359, 1496, 1575, 1737, 1793 |
| Hpy188I | TCN|GA | 176, 181, 441, 1260, 1269, 1593 |
| HpyCH4III | ACN|GT | 331, 398, 498, 564, 630, 859, 1050, 1137, 1176, 1193, 1525 |
| HpyCH4IV | A|CGT | 1700 |
| HpyCH4V | TG|CA | 190, 367, 633, 642, 925, 937, 1060, 1141, 1218, 1353, 1444, 1564, 1627, 1747, 1787, 1898 |
| MboI | |GATC | 178, 1223, 1771 |
| MseI | T|TAA | 231, 1517, 1533, 1797, 1818 |
| MslI | CAPyNN|NNPuTG | 1705 |
| MspA1I | C[AC]G|C[GT]G | 1043, 1349 |
| MwoI | GCNNNNN|NNGC | 71, 366, 641, 795, 834, 933, 948, 1041, 1053, 1065, 1617 |
| N.BstNBI | GAGTCNNNN|N | 1798 |
| NlaIII | CATG| | 92, 188, 640, 739, 932, 1082, 1119, 1355, 1785, 1932 |
| NlaIV | GGN|NCC | 1716 |
| NsiI | ATGCA|T | 1445 |
| NspI | PuCATG|Py | 641, 1120, 1786 |
| PciI | A|CATGT | 1120 |
| PflMI | CCANNNN|NTGG | 257 |
| PspGI | |CC[AT]GG | 321, 1733 |
| PstI | CTGCA|G | 926, 938, 1748 |
| RsaI | GT|AC | 333, 624 |
| SacI | GAGCT|C | 1011 |
| Sau3AI | |GATC | 178, 1223, 1771 |
| Sau96I | G|GNCC | 1391 |
| ScrFI | CC|NGG | 321, 1733 |
| SfcI | C|TPuPyAG | 812, 916, 926, 938, 1049, 1748 |
| SmlI | C|TPyPuAG | 114, 347, 731, 1664 |
| SphI | GCATG|C | 641 |
| StyI | C|C[AT][AT]GG | 655 |
| Taqƒ¿I | T|CGA | 313, 1238, 1909 |
| TfiI | G|A[AT]TC | 404, 920, 993, 1266, 1496, 1575, 1737 |
| TseI | G|C[AT]GC | 65, 927, 936, 951, 1044, 1056, 1746 |
| Tsp45I | |GT[CG]AC | 1429, 1696 |
| Tsp509I | |AATT | 24, 142, 268, 479, 983, 1324, 1721 |
| TspRI | NNCA[CG]TGNN| | 1369 |
| XbaI | T|CTAGA | 105 |
Click here to view TAIR data
>AT1G01060.1 length:1938
ATGGATACTA ATACATCTGG AGAAGAATTA TTAGCTAAGG CAAGAAAGCC | 50 |
ATATACAATA ACAAAGCAGC GAGAGCGATG GACTGAGGAT GAGCATGAGA | 100 |
GGTTTCTAGA AGCCTTGAGG CTTTATGGAA GAGCTTGGCA ACGAATTGAA | 150 |
GAACATATTG GGACAAAGAC TGCTGTTCAG ATCAGAAGTC ATGCACAAAA | 200 |
GTTCTTCACA AAGTTGGAGA AAGAGGCTGA AGTTAAAGGC ATCCCTGTTT | 250 |
GCCAAGCTTT GGACATAGAA ATTCCGCCTC CTCGTCCTAA ACGAAAACCC | 300 |
AATACTCCTT ATCCTCGAAA GCCTGGGAAC AACGGTACAT CTTCCTCTCA | 350 |
AGTATCATCA GCAAAAGATG CAAAACTTGT TTCATCGGCC TCTTCTTCAC | 400 |
AGTTGAATCA GGCGTTCTTG GATTTGGAAA AAATGCCGTT CTCTGAGAAA | 450 |
ACATCAACTG GAAAAGAAAA TCAAGATGAG AATTGCTCGG GTGTTTCTAC | 500 |
TGTGAACAAG TATCCCTTAC CAACGAAACA GGTAAGTGGC GACATTGAAA | 550 |
CAAGTAAGAC CTCAACTGTG GACAACGCGG TTCAAGATGT TCCCAAGAAG | 600 |
AACAAAGACA AAGATGGTAA CGATGGTACT ACTGTGCACA GCATGCAAAA | 650 |
CTACCCTTGG CATTTCCACG CAGATATTGT GAACGGGAAT ATAGCAAAAT | 700 |
GCCCTCAAAA TCATCCCTCA GGTATGGTAT CTCAAGACTT CATGTTTCAT | 750 |
CCTATGAGAG AAGAAACTCA CGGGCACGCA AATCTTCAAG CTACAACAGC | 800 |
ATCTGCTACT ACTACAGCTT CTCATCAAGC GTTTCCAGCT TGTCATTCAC | 850 |
AGGATGATTA CCGTTCGTTT CTCCAGATAT CATCTACTTT CTCCAATCTT | 900 |
ATTATGTCAA CTCTCCTACA GAATCCTGCA GCTCATGCTG CAGCTACATT | 950 |
CGCTGCTTCG GTCTGGCCTT ATGCGAGTGT CGGGAATTCT GGTGATTCAT | 1000 |
CAACCCCAAT GAGCTCTTCT CCTCCAAGTA TAACTGCCAT TGCCGCTGCT | 1050 |
ACAGTAGCTG CTGCAACTGC TTGGTGGGCT TCTCATGGAC TTCTTCCTGT | 1100 |
ATGCGCTCCA GCTCCAATAA CATGTGTTCC ATTCTCAACT GTTGCAGTTC | 1150 |
CAACTCCAGC AATGACTGAA ATGGATACCG TTGAAAATAC TCAACCGTTT | 1200 |
GAGAAACAAA ACACAGCTCT GCAAGATCAA AACTTGGCTT CGAAATCTCC | 1250 |
AGCTTCATCA TCTGATGATT CAGATGAGAC TGGAGTAACC AAGCTAAATG | 1300 |
CCGACTCAAA AACCAATGAT GATAAAATTG AGGAGGTTGT TGTTACTGCC | 1350 |
GCTGTGCATG ACTCAAACAC TGCCCAGAAG AAAAATCTTG TGGACCGCTC | 1400 |
ATCCTGTGGC TCAAATACAC CTTCAGGGAG TGACGCAGAA ACTGATGCAT | 1450 |
TAGATAAAAT GGAGAAAGAT AAAGAGGATG TGAAGGAGAC AGATGAGAAT | 1500 |
CAGCCAGATG TTATTGAGTT AAATAACCGT AAGATTAAAA TGAGAGACAA | 1550 |
CAACAGCAAC AACAATGCAA CTACTGATTC GTGGAAGGAA GTCTCCGAAG | 1600 |
AGGGTCGTAT AGCGTTTCAG GCTCTCTTTG CAAGAGAAAG ATTGCCTCAA | 1650 |
AGCTTTTCGC CTCCTCAAGT GGCAGAGAAT GTGAATAGAA AACAAAGTGA | 1700 |
CACGTCAATG CCATTGGCTC CTAATTTCAA AAGCCAGGAT TCTTGTGCTG | 1750 |
CAGACCAAGA AGGAGTAGTA ATGATCGGTG TTGGAACATG CAAGAGTCTT | 1800 |
AAAACGAGAC AGACAGGATT TAAGCCATAC AAGAGATGTT CAATGGAAGT | 1850 |
GAAAGAGAGC CAAGTTGGGA ACATAAACAA TCAAAGTGAT GAAAAAGTCT | 1900 |
GCAAAAGGCT TCGATTGGAA GGAGAAGCTT CTACATGA | 1950 |
>AT1G01060.1 longest ORF length:645
MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE | 50 |
EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP | 100 |
NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK | 150 |
TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK | 200 |
NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH | 250 |
PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL | 300 |
IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA | 350 |
TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF | 400 |
EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA | 450 |
AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN | 500 |
QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ | 550 |
SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL | 600 |
KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST | 650 |