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| Locus | Common name | Short description |
| AT1G01060 | LHY, LHY1 | LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) |
>AT1G01060.4 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, Aor51HI(Eco47III), ApaI, AscI, AseI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssSI, BstEII, BstXI, BstYI, BstZ17I, BtgI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, FauI, FokI, FseI, FspI, HaeII, HgaI, HpaI, HpaII, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SspI, StuI, SwaI, TliI, Tth111I, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 571 |
| AciI | C|CGC | 272, 1038, 1344, 1390 |
| AflIII | A|CPuPyGT | 1117, 1697 |
| AluI | AG|CT | 31, 130, 253, 784, 811, 832, 925, 937, 1007, 1051, 1105, 1210, 1246, 1287, 1646, 1921 |
| AlwNI | CAGNNN|CTG | 797, 1052, 1436 |
| ApaLI | G|TGCAC | 631 |
| ApoI | Pu|AATTPy | 269, 981 |
| AvaI | C|PyCGPuG | 486 |
| AvaII | G|G[AT]CC | 1388 |
| BanII | GPuGCPy|C | 1008 |
| BfaI | C|TAG | 104 |
| BsaBI | GATNN|NNATC | 1493 |
| BsaJI | C|CNNGG | 322, 652 |
| BsiHKAI | G[AT]GC[AT]|C | 631, 1008 |
| BslI | CCNNNNN|NNGG | 257 |
| BsoBI | C|PyCGPuG | 486 |
| Bsp1286I | G[GAT]GC[CAT]|C | 631, 769, 1008 |
| BsrDI | GCAATGNN| | 1158 |
| BsrI | ACTGGN| | 457, 1276 |
| BssKI | |CCNGG | 321, 1730 |
| BstAPI | GCANNNN|NTGC | 366, 638, 930 |
| BstBI | TT|CGAA | 1236 |
| BstF5I | GGATGNN| | 88, 850, 1474 |
| BstNI | CC|[AT]GG | 321, 1730 |
| BstUI | CG|CG | 571 |
| Bsu36I | CC|TNAGG | 714 |
| BtrI | CAC|GTC | 1698 |
| Cac8I | GCN|NGC | 638, 771 |
| DdeI | C|TNAG | 34, 82, 442, 713 |
| DpnI | GA-CH3|TC | 178, 1220, 1768 |
| DpnII | |GATC | 178, 1220, 1768 |
| EcoRI | G|AATTC | 981 |
| EcoRV | GAT|ATC | 873 |
| Fnu4HI | GC|NGC | 65, 924, 933, 948, 1038, 1053, 1344, 1743 |
| HaeIII | GG|CC | 385, 960 |
| HhaI | GCG|C | 1098 |
| HinP1I | G|CGC | 1098 |
| HincII | GTPy|PuAC | 903 |
| HindIII | A|AGCTT | 254, 1647, 1922 |
| HinfI | G|ANTC | 404, 917, 990, 1263, 1299, 1356, 1493, 1572, 1734, 1790 |
| Hpy188I | TCN|GA | 176, 181, 441, 1257, 1266, 1590 |
| HpyCH4III | ACN|GT | 331, 398, 498, 561, 627, 856, 1047, 1134, 1173, 1190, 1522 |
| HpyCH4IV | A|CGT | 1697 |
| HpyCH4V | TG|CA | 190, 367, 630, 639, 922, 934, 1057, 1138, 1215, 1350, 1441, 1561, 1624, 1744, 1784, 1895 |
| MboI | |GATC | 178, 1220, 1768 |
| MseI | T|TAA | 231, 1514, 1530, 1794, 1815 |
| MslI | CAPyNN|NNPuTG | 1702 |
| MspA1I | C[AC]G|C[GT]G | 1040, 1346 |
| MwoI | GCNNNNN|NNGC | 71, 366, 638, 792, 831, 930, 945, 1038, 1050, 1062, 1614 |
| N.BstNBI | GAGTCNNNN|N | 1795 |
| NlaIII | CATG| | 92, 188, 637, 736, 929, 1079, 1116, 1352, 1782, 1929 |
| NlaIV | GGN|NCC | 1713 |
| NsiI | ATGCA|T | 1442 |
| NspI | PuCATG|Py | 638, 1117, 1783 |
| PciI | A|CATGT | 1117 |
| PflMI | CCANNNN|NTGG | 257 |
| PspGI | |CC[AT]GG | 321, 1730 |
| PstI | CTGCA|G | 923, 935, 1745 |
| RsaI | GT|AC | 333, 621 |
| SacI | GAGCT|C | 1008 |
| Sau3AI | |GATC | 178, 1220, 1768 |
| Sau96I | G|GNCC | 1388 |
| ScrFI | CC|NGG | 321, 1730 |
| SfcI | C|TPuPyAG | 809, 913, 923, 935, 1046, 1745 |
| SmlI | C|TPyPuAG | 114, 347, 728, 1661 |
| SphI | GCATG|C | 638 |
| StyI | C|C[AT][AT]GG | 652 |
| Taqƒ¿I | T|CGA | 313, 1235, 1906 |
| TfiI | G|A[AT]TC | 404, 917, 990, 1263, 1493, 1572, 1734 |
| TseI | G|C[AT]GC | 65, 924, 933, 948, 1041, 1053, 1743 |
| Tsp45I | |GT[CG]AC | 1426, 1693 |
| Tsp509I | |AATT | 24, 142, 268, 479, 980, 1321, 1718 |
| TspRI | NNCA[CG]TGNN| | 1366 |
| XbaI | T|CTAGA | 105 |
Click here to view TAIR data
>AT1G01060.4 length:1935
ATGGATACTA ATACATCTGG AGAAGAATTA TTAGCTAAGG CAAGAAAGCC | 50 |
ATATACAATA ACAAAGCAGC GAGAGCGATG GACTGAGGAT GAGCATGAGA | 100 |
GGTTTCTAGA AGCCTTGAGG CTTTATGGAA GAGCTTGGCA ACGAATTGAA | 150 |
GAACATATTG GGACAAAGAC TGCTGTTCAG ATCAGAAGTC ATGCACAAAA | 200 |
GTTCTTCACA AAGTTGGAGA AAGAGGCTGA AGTTAAAGGC ATCCCTGTTT | 250 |
GCCAAGCTTT GGACATAGAA ATTCCGCCTC CTCGTCCTAA ACGAAAACCC | 300 |
AATACTCCTT ATCCTCGAAA GCCTGGGAAC AACGGTACAT CTTCCTCTCA | 350 |
AGTATCATCA GCAAAAGATG CAAAACTTGT TTCATCGGCC TCTTCTTCAC | 400 |
AGTTGAATCA GGCGTTCTTG GATTTGGAAA AAATGCCGTT CTCTGAGAAA | 450 |
ACATCAACTG GAAAAGAAAA TCAAGATGAG AATTGCTCGG GTGTTTCTAC | 500 |
TGTGAACAAG TATCCCTTAC CAACGAAAGT AAGTGGCGAC ATTGAAACAA | 550 |
GTAAGACCTC AACTGTGGAC AACGCGGTTC AAGATGTTCC CAAGAAGAAC | 600 |
AAAGACAAAG ATGGTAACGA TGGTACTACT GTGCACAGCA TGCAAAACTA | 650 |
CCCTTGGCAT TTCCACGCAG ATATTGTGAA CGGGAATATA GCAAAATGCC | 700 |
CTCAAAATCA TCCCTCAGGT ATGGTATCTC AAGACTTCAT GTTTCATCCT | 750 |
ATGAGAGAAG AAACTCACGG GCACGCAAAT CTTCAAGCTA CAACAGCATC | 800 |
TGCTACTACT ACAGCTTCTC ATCAAGCGTT TCCAGCTTGT CATTCACAGG | 850 |
ATGATTACCG TTCGTTTCTC CAGATATCAT CTACTTTCTC CAATCTTATT | 900 |
ATGTCAACTC TCCTACAGAA TCCTGCAGCT CATGCTGCAG CTACATTCGC | 950 |
TGCTTCGGTC TGGCCTTATG CGAGTGTCGG GAATTCTGGT GATTCATCAA | 1000 |
CCCCAATGAG CTCTTCTCCT CCAAGTATAA CTGCCATTGC CGCTGCTACA | 1050 |
GTAGCTGCTG CAACTGCTTG GTGGGCTTCT CATGGACTTC TTCCTGTATG | 1100 |
CGCTCCAGCT CCAATAACAT GTGTTCCATT CTCAACTGTT GCAGTTCCAA | 1150 |
CTCCAGCAAT GACTGAAATG GATACCGTTG AAAATACTCA ACCGTTTGAG | 1200 |
AAACAAAACA CAGCTCTGCA AGATCAAAAC TTGGCTTCGA AATCTCCAGC | 1250 |
TTCATCATCT GATGATTCAG ATGAGACTGG AGTAACCAAG CTAAATGCCG | 1300 |
ACTCAAAAAC CAATGATGAT AAAATTGAGG AGGTTGTTGT TACTGCCGCT | 1350 |
GTGCATGACT CAAACACTGC CCAGAAGAAA AATCTTGTGG ACCGCTCATC | 1400 |
CTGTGGCTCA AATACACCTT CAGGGAGTGA CGCAGAAACT GATGCATTAG | 1450 |
ATAAAATGGA GAAAGATAAA GAGGATGTGA AGGAGACAGA TGAGAATCAG | 1500 |
CCAGATGTTA TTGAGTTAAA TAACCGTAAG ATTAAAATGA GAGACAACAA | 1550 |
CAGCAACAAC AATGCAACTA CTGATTCGTG GAAGGAAGTC TCCGAAGAGG | 1600 |
GTCGTATAGC GTTTCAGGCT CTCTTTGCAA GAGAAAGATT GCCTCAAAGC | 1650 |
TTTTCGCCTC CTCAAGTGGC AGAGAATGTG AATAGAAAAC AAAGTGACAC | 1700 |
GTCAATGCCA TTGGCTCCTA ATTTCAAAAG CCAGGATTCT TGTGCTGCAG | 1750 |
ACCAAGAAGG AGTAGTAATG ATCGGTGTTG GAACATGCAA GAGTCTTAAA | 1800 |
ACGAGACAGA CAGGATTTAA GCCATACAAG AGATGTTCAA TGGAAGTGAA | 1850 |
AGAGAGCCAA GTTGGGAACA TAAACAATCA AAGTGATGAA AAAGTCTGCA | 1900 |
AAAGGCTTCG ATTGGAAGGA GAAGCTTCTA CATGA | 1950 |
>AT1G01060.4 longest ORF length:644
MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE | 50 |
EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP | 100 |
NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK | 150 |
TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN | 200 |
KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP | 250 |
MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI | 300 |
MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT | 350 |
VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE | 400 |
KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA | 450 |
VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ | 500 |
PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS | 550 |
FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK | 600 |
TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST | 650 |