|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G01060 | LHY, LHY1 | LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) |
>AT1G01060.4 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, XhoI
| Name | Recognition sequence | Cut positions |
| EcoRI | G|AATTC | 981 |
| EcoRV | GAT|ATC | 873 |
| HindIII | A|AGCTT | 254, 1647, 1922 |
| PstI | CTGCA|G | 923, 935, 1745 |
| SacI | GAGCT|C | 1008 |
| StyI | C|C[AT][AT]GG | 652 |
| XbaI | T|CTAGA | 105 |
Click here to view TAIR data
>AT1G01060.4 length:1935
ATGGATACTA ATACATCTGG AGAAGAATTA TTAGCTAAGG CAAGAAAGCC | 50 |
ATATACAATA ACAAAGCAGC GAGAGCGATG GACTGAGGAT GAGCATGAGA | 100 |
GGTTTCTAGA AGCCTTGAGG CTTTATGGAA GAGCTTGGCA ACGAATTGAA | 150 |
GAACATATTG GGACAAAGAC TGCTGTTCAG ATCAGAAGTC ATGCACAAAA | 200 |
GTTCTTCACA AAGTTGGAGA AAGAGGCTGA AGTTAAAGGC ATCCCTGTTT | 250 |
GCCAAGCTTT GGACATAGAA ATTCCGCCTC CTCGTCCTAA ACGAAAACCC | 300 |
AATACTCCTT ATCCTCGAAA GCCTGGGAAC AACGGTACAT CTTCCTCTCA | 350 |
AGTATCATCA GCAAAAGATG CAAAACTTGT TTCATCGGCC TCTTCTTCAC | 400 |
AGTTGAATCA GGCGTTCTTG GATTTGGAAA AAATGCCGTT CTCTGAGAAA | 450 |
ACATCAACTG GAAAAGAAAA TCAAGATGAG AATTGCTCGG GTGTTTCTAC | 500 |
TGTGAACAAG TATCCCTTAC CAACGAAAGT AAGTGGCGAC ATTGAAACAA | 550 |
GTAAGACCTC AACTGTGGAC AACGCGGTTC AAGATGTTCC CAAGAAGAAC | 600 |
AAAGACAAAG ATGGTAACGA TGGTACTACT GTGCACAGCA TGCAAAACTA | 650 |
CCCTTGGCAT TTCCACGCAG ATATTGTGAA CGGGAATATA GCAAAATGCC | 700 |
CTCAAAATCA TCCCTCAGGT ATGGTATCTC AAGACTTCAT GTTTCATCCT | 750 |
ATGAGAGAAG AAACTCACGG GCACGCAAAT CTTCAAGCTA CAACAGCATC | 800 |
TGCTACTACT ACAGCTTCTC ATCAAGCGTT TCCAGCTTGT CATTCACAGG | 850 |
ATGATTACCG TTCGTTTCTC CAGATATCAT CTACTTTCTC CAATCTTATT | 900 |
ATGTCAACTC TCCTACAGAA TCCTGCAGCT CATGCTGCAG CTACATTCGC | 950 |
TGCTTCGGTC TGGCCTTATG CGAGTGTCGG GAATTCTGGT GATTCATCAA | 1000 |
CCCCAATGAG CTCTTCTCCT CCAAGTATAA CTGCCATTGC CGCTGCTACA | 1050 |
GTAGCTGCTG CAACTGCTTG GTGGGCTTCT CATGGACTTC TTCCTGTATG | 1100 |
CGCTCCAGCT CCAATAACAT GTGTTCCATT CTCAACTGTT GCAGTTCCAA | 1150 |
CTCCAGCAAT GACTGAAATG GATACCGTTG AAAATACTCA ACCGTTTGAG | 1200 |
AAACAAAACA CAGCTCTGCA AGATCAAAAC TTGGCTTCGA AATCTCCAGC | 1250 |
TTCATCATCT GATGATTCAG ATGAGACTGG AGTAACCAAG CTAAATGCCG | 1300 |
ACTCAAAAAC CAATGATGAT AAAATTGAGG AGGTTGTTGT TACTGCCGCT | 1350 |
GTGCATGACT CAAACACTGC CCAGAAGAAA AATCTTGTGG ACCGCTCATC | 1400 |
CTGTGGCTCA AATACACCTT CAGGGAGTGA CGCAGAAACT GATGCATTAG | 1450 |
ATAAAATGGA GAAAGATAAA GAGGATGTGA AGGAGACAGA TGAGAATCAG | 1500 |
CCAGATGTTA TTGAGTTAAA TAACCGTAAG ATTAAAATGA GAGACAACAA | 1550 |
CAGCAACAAC AATGCAACTA CTGATTCGTG GAAGGAAGTC TCCGAAGAGG | 1600 |
GTCGTATAGC GTTTCAGGCT CTCTTTGCAA GAGAAAGATT GCCTCAAAGC | 1650 |
TTTTCGCCTC CTCAAGTGGC AGAGAATGTG AATAGAAAAC AAAGTGACAC | 1700 |
GTCAATGCCA TTGGCTCCTA ATTTCAAAAG CCAGGATTCT TGTGCTGCAG | 1750 |
ACCAAGAAGG AGTAGTAATG ATCGGTGTTG GAACATGCAA GAGTCTTAAA | 1800 |
ACGAGACAGA CAGGATTTAA GCCATACAAG AGATGTTCAA TGGAAGTGAA | 1850 |
AGAGAGCCAA GTTGGGAACA TAAACAATCA AAGTGATGAA AAAGTCTGCA | 1900 |
AAAGGCTTCG ATTGGAAGGA GAAGCTTCTA CATGA | 1950 |
>AT1G01060.4 longest ORF length:644
MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE | 50 |
EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP | 100 |
NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK | 150 |
TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN | 200 |
KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP | 250 |
MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI | 300 |
MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT | 350 |
VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE | 400 |
KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA | 450 |
VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ | 500 |
PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS | 550 |
FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK | 600 |
TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST | 650 |