fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G01260 bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)

>AT1G01260.2 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, StyI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 1710
HindIII A|AGCTT 373, 1289, 1330
PstI CTGCA|G 142
SacI GAGCT|C 68, 923
XbaI T|CTAGA 1723
XhoI C|TCGAG 482


Click here to view TAIR data

>AT1G01260.2 length:1773
ATGAATATTG GTCGCCTAGT GTGGAACGAG GACGATAAAG CGATTGTTGC 
50
GTCATTACTG GGCAAACGAG CTCTCGATTA CTTGCTTTCC AACTCTGTTT 
100
CCAATGCTAA TCTCTTGATG ACTCTAGGAA GCGACGAGAA TCTGCAGAAC 
150
AAGCTCTCGG ATCTCGTCGA GAGACCCAAC GCTTCTAATT TCTCTTGGAA 
200
CTACGCCATT TTCTGGCAGA TTTCCAGGTC AAAGGCCGGA GATTTGGTTC 
250
TCTGTTGGGG CGATGGATAT TGCAGAGAGC CTAAAGAAGG AGAGAAATCA 
300
GAGATCGTTA GGATTCTAAG TATGGGAAGA GAAGAAGAAA CGCATCAGAC 
350
TATGAGAAAG AGAGTATTGC AAAAGCTTCA TGATTTGTTT GGTGGCTCAG 
400
AAGAAGAGAA CTGTGCTTTA GGACTAGATA GAGTTACTGA CACTGAGATG 
450
TTTCTTCTTT CTTCTATGTA TTTCTCATTC CCTCGAGGTG AAGGTGGTCC 
500
AGGCAAGTGT TTTGCCTCTG CTAAACCTGT TTGGTTATCC GATGTCGTCA 
550
ATTCGGGTTC TGATTATTGC GTTAGATCGT TTCTTGCTAA ATCTGCTGGC 
600
ATTCAGACTG TTGTTTTGGT TCCTACTGAT CTTGGTGTTG TTGAGTTAGG 
650
CTCAACTTCA TGTTTGCCTG AAAGTGAAGA CTCAATCTTG TCTATAAGAT 
700
CATTGTTTAC CAGTAGTTTG CCTCCGGTTA GAGCTGTTGC TTTACCTGTT 
750
ACTGTAGCTG AAAAGATTGA TGATAACAGA ACGAAGATAT TCGGCAAGGA 
800
TTTGCACAAT TCAGGGTTTC TTCAACATCA TCAGCATCAC CAACAACAAC 
850
AACAACAACC ACCGCAACAG CAACAGCATA GACAGTTTAG AGAGAAACTC 
900
ACGGTTAGAA AAATGGATGA TAGAGCTCCC AAGAGATTAG ATGCTTATCC 
950
GAATAATGGG AACAGGTTTA TGTTTTCGAA CCCAGGCACC AACAACAACA 
1000
CTCTTCTGAG TCCTACTTGG GTTCAACCTG AGAACTACAC GAGGCCAATC 
1050
AACGTGAAGG AAGTTCCAAG CACGGATGAG TTCAAGTTTT TACCTTTGCA 
1100
GCAATCATCG CAGAGGCTGC TTCCTCCTGC TCAAATGCAG ATAGATTTCT 
1150
CTGCTGCGAG TTCAAGGGCT TCAGAGAATA ATTCAGATGG AGAAGGAGGA 
1200
GGGGAATGGG CAGATGCAGT GGGTGCTGAT GAATCTGGTA ACAACAGACC 
1250
AAGAAAACGC GGAAGGAGAC CTGCCAACGG AAGAGCGGAA GCTTTGAACC 
1300
ATGTAGAAGC AGAGAGGCAG AGGCGTGAGA AGCTTAACCA GAGGTTTTAC 
1350
GCTCTGAGAT CCGTTGTTCC CAACATATCC AAGATGGACA AAGCGTCCTT 
1400
GTTGGGAGAC GCGGTTTCTT ATATAAACGA GCTTCACGCG AAGCTAAAGG 
1450
TCATGGAAGC AGAGAGAGAG AGGTTAGGGT ATAGCTCAAA TCCACCTATC 
1500
AGCTTGGATT CAGATATAAA TGTTCAAACC TCAGGTGAAG ATGTCACAGT 
1550
GAGGATAAAC TGTCCGTTGG AGTCTCATCC GGCTTCCAGA ATCTTCCATG 
1600
CGTTTGAAGA GAGTAAAGTA GAAGTGATAA ACTCGAACCT GGAAGTTTCT 
1650
CAGGACACAG TGTTGCATAC GTTTGTAGTC AAATCTGAAG AATTAACGAA 
1700
AGAGAAGCTG ATATCGGCCT TGTCTAGAGA GCAAACAAAT TCAGTTCAGT 
1750
CAAGAACATC ATCAGGTAGA TAG
1800

>AT1G01260.2 longest ORF length:590
MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN 
50
KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS 
100
EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM 
150
FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG 
200
IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV 
250
TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL 
300
TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI 
350
NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG 
400
GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY 
450
ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI 
500
SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS 
550
QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR 
600