fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT1G01930 zinc finger protein-related (.1)

>AT1G01930.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 1338
EcoRV GAT|ATC 1240
NheI G|CTAGC 880
PstI CTGCA|G 1688
StyI C|C[AT][AT]GG 188, 761


Click here to view TAIR data

>AT1G01930.1 length:1743
ATGGCGACCA CCGGCGCGGC GGCCACCACC GAGATTGGTA ATCCAGAATA 
50
TAAACAGCCT CGATCGATAT TTGACTTGAC GGCGGATTTC TTTGACTCGT 
100
GTCGGTTGTC GAATCCTTCG GAGACTCAAT CGGCATTCGG ACCACCCAAA 
150
ACTTTCGATC CAGAGGAGGC GGAGGAGGAT AAGAGTTCCA AGGACGGCGT 
200
GATTTTGGAC AGATGGACCT GTAATACTTG TAAAATTGAG TTCCTGTCTC 
250
TTCAAGATCA ACGCTACCAC TTCAAGTCCG ATATTCATCG CCTTAACATC 
300
AAGCTGAGTG TTGCTGGCAA GGCTATATTA AAAGAGGAAG ATGTTGATGA 
350
GTTGACATCT GAGTCGGTCC AAGACTATGA CGTGTCTAGC ATATCAGGTT 
400
CAGAGGACGA AGCTGAGACT AGACCACCCT CTTTCCACTT TGATGCTCAA 
450
AAGGGTATTG ATAAAAAGAA ACTATTTTTC CGTCTTCAAA GTGGTGACAA 
500
AGTTTCTATC TGGAAATGCT TAATCATGGA CGACGCTGAA AGTGTTTCGT 
550
TCGAGAATGA CAGAGGAGTT TCTGTTGACT GTTGTGGTAG CTTGGTCGAG 
600
AATGAAGTTA CTGAGAGGTT GAGAAATTTG ATTCGAGAGA ATAAGGATGA 
650
TAGGCAAATG CGTGTCGTGT TGCTTGCAAG TGGTGGCCAC TTTGCCGGTA 
700
CTGTCTTTAA TGGAAAGTCG GTTGTGGCTC ATAAGACATT CCACAGATAT 
750
GTTGTAAGAG CCAAGGCTGG TAAAAAGCAG TCCACAAAAG ATGCAAGCGG 
800
GAGAAGTATA CACTCTGCCG GAGCCTCACT TCGTCGTTAC AATGAACTTG 
850
CTTTAAAAAA GGATATTCAA GAGCTACTTG CTAGCTGGAA ACCTTATTTT 
900
GATGGTGCTG CTTGTGTTTT TGTCCATGCT CCCTCAAGCA GTAGGCAATT 
950
ACTTTTCAAT GGAGGCAAAC CGTACTTTAG CAGCCAAAAC TGCGCTGTAC 
1000
GAAACGTTCC ATTTACGATC CGTCGGCCAA CCTTCAAGGA ATCACAGCGT 
1050
ATATATAATC AGTTGACTCA GATTGCACAT GTAACTGAGG AGATTTTTGT 
1100
TAATCGACCA GAAGTCACCA AAGCTAATAC AGTGGTGCAG ACCCACAATG 
1150
AGGATTCTGG CAAAACCTCA AGAAAGGAAG AGCCCGATGA AACTTCTTCT 
1200
AGCAACATAA TCTTAGAGGA ACCAAATCGT ATAGAAGAGG ATATCGAGGA 
1250
TGGAGTTACT GGTACGTCAA CTGCCTTACA TGAAGCTGCC AAATCGGGTG 
1300
ATTGTGAAAG AGTTATGGAG TTCTTGGAGG AGGGTATGGA TCCTTGTGCT 
1350
AAGGATGAAA GAGGCAGAAC GCCATACATG CTTGCAAATG AGAAGGAAGT 
1400
GAGAAACACT TTCAGACGGT TTATGGCGTT AAACCTTGAA AAATGGAATT 
1450
GGCATGATGC TAAAGTACCC AGCCCGCTCA CAAAAGAGAT GGAGGAATCT 
1500
CAAGCTGCCA AGCAGGCAGA AAAAGACGCC AAGCAGAAAG CAAGAACAAA 
1550
GGAGTTGAAG AAACTACGCA AAGCCCGAGA AAAGAAGGCT CAGGCCGAAG 
1600
CTGCGCAGGC GGAGAAGGAG AAGCCAATTT CTAAAGTGGA GGAAGTGAGG 
1650
AGAGCAATGG CAGCACAGAG GGAAAAGAGA GCAGCCGCTG CAGAAAGACG 
1700
GATGGCATCA CTTAACATTC AAAGCAGTTC AAGCACAAGT TAA
1750

>AT1G01930.1 longest ORF length:580
MATTGAAATT EIGNPEYKQP RSIFDLTADF FDSCRLSNPS ETQSAFGPPK 
50
TFDPEEAEED KSSKDGVILD RWTCNTCKIE FLSLQDQRYH FKSDIHRLNI 
100
KLSVAGKAIL KEEDVDELTS ESVQDYDVSS ISGSEDEAET RPPSFHFDAQ 
150
KGIDKKKLFF RLQSGDKVSI WKCLIMDDAE SVSFENDRGV SVDCCGSLVE 
200
NEVTERLRNL IRENKDDRQM RVVLLASGGH FAGTVFNGKS VVAHKTFHRY 
250
VVRAKAGKKQ STKDASGRSI HSAGASLRRY NELALKKDIQ ELLASWKPYF 
300
DGAACVFVHA PSSSRQLLFN GGKPYFSSQN CAVRNVPFTI RRPTFKESQR 
350
IYNQLTQIAH VTEEIFVNRP EVTKANTVVQ THNEDSGKTS RKEEPDETSS 
400
SNIILEEPNR IEEDIEDGVT GTSTALHEAA KSGDCERVME FLEEGMDPCA 
450
KDERGRTPYM LANEKEVRNT FRRFMALNLE KWNWHDAKVP SPLTKEMEES 
500
QAAKQAEKDA KQKARTKELK KLRKAREKKA QAEAAQAEKE KPISKVEEVR 
550
RAMAAQREKR AAAAERRMAS LNIQSSSSTS 
600