|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT1G02340 | FBI1, RSF1, REP1, HFR1, bHLH026 | REDUCED SENSITIVITY TO FAR-RED LIGHT 1, REDUCED PHYTOCHROME SIGNALING 1, LONG HYPOCOTYL IN FAR-RED, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT1G02340.1 CDS map
>>Show genomic map
Uncut enzymes: Acc65I, AccI, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsoBI, Bsp1286I, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cac8I, Cfr10I, DraI, DraIII, DrdI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MslI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, StuI, StyI, SwaI, TliI, TseI, Tth111I, XbaI, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AatII | GACGT|C | 43 |
| AciI | C|CGC | 692 |
| AflII | C|TTAAG | 357 |
| AluI | AG|CT | 13, 465, 790 |
| BalI | TGG|CCA | 715 |
| BclI | T|GATCA | 147, 153, 261 |
| BfaI | C|TAG | 756 |
| BsaBI | GATNN|NNATC | 104, 152, 167, 263 |
| BsaHI | GPu|CGPyC | 43 |
| BslI | CCNNNNN|NNGG | 668 |
| BsmI | GAATGCN| | 621 |
| BspDI | AT|CGAT | 302 |
| BspHI | T|CATGA | 150 |
| BsrDI | GCAATGNN| | 645 |
| BssKI | |CCNGG | 350 |
| BstF5I | GGATGNN| | 32 |
| BstNI | CC|[AT]GG | 350 |
| ClaI | AT|CGAT | 302 |
| DdeI | C|TNAG | 312, 802 |
| DpnI | GA-CH3|TC | 48, 65, 104, 146, 152, 260, 291, 296 |
| DpnII | |GATC | 48, 65, 104, 146, 152, 260, 291, 296 |
| EaeI | Py|GGCCPu | 715 |
| Fnu4HI | GC|NGC | 692 |
| HaeIII | GG|CC | 659, 714 |
| HincII | GTPy|PuAC | 570 |
| HindIII | A|AGCTT | 14 |
| HinfI | G|ANTC | 188, 372, 584, 674 |
| HpaII | C|CGG | 599, 668, 701 |
| Hpy188I | TCN|GA | 46, 81, 173, 249, 285, 294, 311, 375, 560 |
| Hpy99I | CG[AT]CG| | 41, 342 |
| HpyCH4III | ACN|GT | 118, 573, 725, 814 |
| HpyCH4IV | A|CGT | 42, 340 |
| HpyCH4V | TG|CA | 621 |
| MboI | |GATC | 48, 65, 104, 146, 152, 260, 291, 296 |
| MscI | TGG|CCA | 715 |
| MseI | T|TAA | 273, 356, 707 |
| MspI | C|CGG | 599, 668, 701 |
| MwoI | GCNNNNN|NNGC | 692 |
| NlaIII | CATG| | 19, 73, 149, 323, 631, 679, 857 |
| NlaIV | GGN|NCC | 418, 822 |
| NspI | PuCATG|Py | 632 |
| PspGI | |CC[AT]GG | 350 |
| RsaI | GT|AC | 479 |
| Sau3AI | |GATC | 48, 65, 104, 146, 152, 260, 291, 296 |
| ScrFI | CC|NGG | 350 |
| SfcI | C|TPuPyAG | 469 |
| SmlI | C|TPyPuAG | 357 |
| SspI | AAT|ATT | 736 |
| Taqƒ¿I | T|CGA | 2, 301, 409, 516 |
| TfiI | G|A[AT]TC | 188, 372, 584, 674 |
| Tsp45I | |GT[CG]AC | 490 |
| Tsp509I | |AATT | 24, 164, 485, 697, 710 |
| TspRI | NNCA[CG]TGNN| | 576 |
| XmnI | GAANN|NNTTC | 417 |
Click here to view TAIR data
>AT1G02340.1 length:879
ATGTCGAATA ATCAAGCTTT CATGGAATTG GGATGGAGAA ACGACGTCGG | 50 |
ATCACTTGCT GTGAAAGATC AGGGCATGAT GTCAGAAAGA GCAAGAAGTG | 100 |
ATGAAGATCG TCTAATCAAC GGTCTAAAAT GGGGCTACGG CTACTTTGAT | 150 |
CATGATCAAA CTGATAATTA TCTTCAGATT GTTCCAGAGA TTCATAAAGA | 200 |
AGTAGAAAAT GCGAAGGAGG ATTTATTGGT TGTTGTCCCT GATGAACATT | 250 |
CTGAAACTGA TGATCATCAT CATATTAAAG ATTTTTCAGA GAGATCAGAT | 300 |
CATCGATTTT ATCTGAGAAA CAAACATGAG AACCCCAAAA AACGTCGTAT | 350 |
CCAGGTCTTA AGTAGTGATG ATGAATCGGA GGAGTTTACA AGAGAAGTTC | 400 |
CTTCAGTTAC TCGAAAAGGT TCCAAGAGAA GAAGAAGAGA CGAGAAGATG | 450 |
AGTAATAAGA TGCGTAAGCT ACAGCAACTC GTACCTAATT GTCACAAGAC | 500 |
GGACAAGGTT TCGGTTCTCG ACAAGACCAT AGAGTATATG AAAAACCTTC | 550 |
AACTTCAACT TCAGATGATG TCAACAGTGG GGGTGAATCC TTATTTTCTT | 600 |
CCGGCGACAT TAGGATTTGG AATGCACAAC CACATGCTGA CGGCAATGGC | 650 |
TTCGGCTCAC GGCCTAAATC CGGCGAATCA CATGATGCCA TCGCCGCTAA | 700 |
TTCCGGCGTT AAATTGGCCA TTACCACCGT TTACTAATAT TTCATTCCCA | 750 |
CATTCATCTA GTCAATCTCT ATTTCTTACA ACATCATCAC CAGCTTCTTC | 800 |
TCCTCAGTCT CTTCACGGTT TGGTTCCTTA TTTCCCAAGT TTCTTGGATT | 850 |
TTTCTTCCCA TGCGATGAGA AGACTATGA | 900 |
>AT1G02340.1 longest ORF length:292
MSNNQAFMEL GWRNDVGSLA VKDQGMMSER ARSDEDRLIN GLKWGYGYFD | 50 |
HDQTDNYLQI VPEIHKEVEN AKEDLLVVVP DEHSETDDHH HIKDFSERSD | 100 |
HRFYLRNKHE NPKKRRIQVL SSDDESEEFT REVPSVTRKG SKRRRRDEKM | 150 |
SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQMM STVGVNPYFL | 200 |
PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP LPPFTNISFP | 250 |
HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL | 300 |